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  • Augustin, L.B., Jacobson, B.A., and Fuchs, J.A. (1994) Escherichia coli Fis and DnaA proteins bind specifically to the nrd promoter region and affect expression of an nrd-lac fusion. J Bacteriol 0: 378387.
  • Azam, T.A., Iwata, A., Nishimura, A., Ueda, S., and Ishihama, A. (1999) Growth phase-dependent variation in protein composition of the Escherichia coli nucleoid. J Bacteriol 181: 63636370.
  • Bahloul, A., Boubrik, F., and Rouviere-Yaniv, J. (2001) Roles of Escherichia coli histone-like protein HU in DNA replication: HU-beta suppresses the thermosensitivity of dna46ts. Biochimie 83: 219229.
  • Baker, T.A., and Bell, S.P. (1998) Polymerases and the replisome: machines within machines. Cell 92: 295305.
  • Ball, C.A., Osuna, R., Ferguson, K.C., and Johnson, R.C. (1992) Dramatic changes in Fis levels upon nutrient upshift in Escherichia coli. J Bacteriol 174: 80438056.
  • Boye, E., Lyngstadaas, A., Lobner-Olesen, A., Skarstad, K., and Wold, S. (1993) Regulation of DNA replication in Escherichia coli. In DNA replication and the cell cycle. Fanning, E., Knippers, R and Winnacker, E.-L., (eds). Berlin: Springer, pp. 1526.
  • Boye, E., Stokke, T., Kleckner, N., and Skarstad, K. (1996) Coordinating DNA replication initiation with cell growth: differential roles for DnaA and SeqA proteins. Proc Natl Acad Sci USA 93: 1220612211.
  • Boye, E., Lobner-Olesen, A., and Skarstad, K. (2000) Limiting DNA replication to once and only once. EMBO Rep 1: 479483.
  • Bramhill, D., and Kornberg, A. (1988) Duplex opening by dnaA protein at novel sequences in initiation of replication at the origin of the E. coli chromosome. Cell 52: 743755.
  • Cassler, M.R., Grimwade, J.E., and Leonard, A.C. (1995) Cell cycle-specific changes in nucleoprotein complexes at a chromosomal replication origin. EMBO J 14: 58335841.
  • Cassler, M.R., Grimwade, J.E., McGarry, K.C., Mott, R.T., and Leonard, A.C. (1999) Drunken-cell footprints: nuclease treatment of ethanol-permeabilized bacteria reveals an initiation-like nucleoprotein complex in stationary phase replication origins. Nucleic Acids Res 27: 45704576.
  • Christensen, B.B., Atlung, T., and Hansen, F.G. (1999) DnaA boxes are important elements in setting the initiation mass of Escherichia coli. J Bacteriol 181: 26832688.
  • Crooke, E., Thresher, R., Hwang, D.S., Griffith, J., and Kornberg, A. (1993) Replicatively active complexes of DnaA protein and the Escherichia coli chromosomal origin observed in the electron microscope. J Mol Biol 233: 1624.
  • Filutowicz, M., Ross, W., Wild, J., and Gourse, R.L. (1992) Involvement of Fis protein in replication of the Escherichia coli chromosome. J Bacteriol 174: 398407.
  • Finkel, S.E., and Johnson, R.C. (1992) The Fis protein: it's not just for DNA inversion anymore. Mol Microbiol 6: 32573265.
  • Von Freiesleben, U., and Rasmussen, K.V. (1992) The level of supercoiling affects the regulation of DNA replication in Escherichia coli. Res Microbiol 143: 655663.
  • Froelich, J.M., Phuong, T.K., and Zyskind, J.W. (1996) Fis binding in the dnaA operon promoter region. J Bacteriol 178: 60066012.
  • Fuller, R.S., Funnell, B.E., and Kornberg, A. (1984) The dnaA protein complex with the E. coli chromosomal replication origin (oriC) and other DNA sites. Cell 38: 889900.
  • Gille, H., Egan, J.B., Roth, A., and Messer, W. (1991) The FIS protein binds and bends the origin of chromosomal DNA replication, oriC, of Escherichia coli. Nucleic Acids Res 19: 41674172.
  • Grimwade, J.E., Ryan, V.T., and Leonard, A.C. (2000) IHF redistributes bound initiator protein, DnaA, on supercoiled oriC of Escherichia coli. Mol Microbiol 35: 835844.
  • Hansen, F.G., Christensen, B.B., and Atlung, T. (1991) The initiator titration model: computer simulation of chromosome and minichromosome control. Res Microbiol 142: 161167.
  • Helmstetter, C.E. (1996) Timing of synthetic activities in the cell cycle. In Escherichia Coli and Salmonella: Cellular and Molecular Biology. Neidhardt, F.C., Curtis, R. III, Ingraham, J., Lin, E.C.C., Low, K.B., Magasanik, B., et al. (eds). Washington, D.C.: American Society for Microbiology Press, pp. 16271639.
  • Hiasa, H., and Marians, K.J. (1994) Fis cannot support oriC DNA replication in vitro. J Biol Chem 269: 2499925003.
  • Hwang, D.S., and Kornberg, A. (1992) Opening of the replication origin of Escherichia coli by DnaA protein with protein HU or IHF. J Biol Chem 267: 2308323086.
  • Kaguni, J. (1997) Escherichia coli DnaA protein: the replication initiator. Mol Cell 7: 145157.
  • Kurokawa, K., Nishida, S., Emoto, A., Sekimizu, K., and Katayama, T. (1999) Replication cycle-coordinated change of the adenine nucleotide-bound forms of DnaA protein in Escherichia coli. EMBO J 18: 66426652.
  • Li, Z., and Crooke, E. (1999) Functional analysis of affinity-purified polyhistidine-tagged DnaA protein. Protein Expr Purif 17: 4148.
  • Lobner-Olesen, A., Skarstad, K., Hansen, F.G., Von Meyenburg, K., and Boye, E. (1989) The DnaA protein determines the initiation mass of Escherichia coli K-12. Cell 57: 881889.
  • Lobner-Olesen, A., Hansen, F.G., Rasmussen, K.V., Martin, B., and Kuempel, P.L. (1994) The initiation cascade for chromosome replication in wild-type and Dam methyltransferase deficient Escherichia coli cells. EMBO J 13: 18561862.
  • Lu, M., Campbell, J.L., Boye, E., and Kleckner, N. (1994) SeqA: a negative modulator of replication initiation in E. coli. Cell 77: 413426.
  • Margulies, C., and Kaguni, J.M. (1996) Ordered and sequential binding of DnaA protein to oriC, the chromosomal origin of Escherichia coli. J Biol Chem 271: 1703517040.
  • Margulies, C., and Kaguni, J.M. (1998) The FIS protein fails to block the binding of DnaA protein to oriC, the Escherichia coli chromosomal origin. Nucleic Acids Res 26: 51705175.
  • Matsui, M., Oka, A., Takanami, M., Yasuda, S., and Hirota, Y. (1985) Sites of dnaA protein-binding in the replication origin of the Escherichia coli K-12 chromosome. J Mol Biol 184: 529533.
  • Messer, W. (2002) The bacterial replication initiator DnaA. DnaA and oriC, the bacterial mode to initiate DNA replication. FEMS Microbiol Rev 26: 355374.
  • Nash, H.A. (1996) The E. coli HU proteins: accessory factors for complex protein, DNA and assemblies. In Regulation of gene expression in Escherichia coli. Lin, E.C.C and Lynch, A.S., (eds). Austin, TX: Landes Co., pp. 149166.
  • Nilsson, L., and Emilsson, V. (1994) Factor for inversion stimulation-dependent growth rate regulation of individual tRNA species in Escherichia coli. J Biol Chem 269: 94609465.
  • Nilsson, L., Verbeek, H., Vijgenboom, E., Van Drunen, C., Vanet, A., and Bosch, L. (1992) FIS-dependent trans activation of stable RNA operons of Escherichia coli under various growth conditions. J Bacteriol 174: 921929.
  • Polaczek, P. (1990) Bending of the origin of replication of E. coli by binding of IHF at a specific site. New Biol 2: 265271.
  • Roth, A., Urmoneit, B., and Messer, W. (1994) Functions of histone-like proteins in the initiation of DNA replication at oriC of Escherichia coli. Biochimie 76: 917923.
  • Ryan, V.T., Grimwade, J.E., Nievera, C.J., and Leonard, A.C. (2002) IHF and HU stimulate assembly of pre-replication complexes at Escherichia coli oriC by two different mechanisms. Mol Microbiol 46: 113124.
  • Samitt, C.E., Hansen, F.G., Miller, J.F., and Schaechter, M. (1989) In vivo studies of DnaA binding to the origin of replication of Escherichia coli. EMBO J 8: 989993.
  • Schaefer, C., and Messer, W. (1991) DnaA protein/DNA interaction. Modulation of the recognition sequence. Mol Gen Genet 226: 3440.
  • Schaper, S., and Messer, W. (1995) Interaction of the initiator protein DnaA of Escherichia coli with its DNA target. J Biol Chem 270: 1762217626.
  • Sekimizu, K., Bramhill, D., and Kornberg, A. (1987) ATP activates dnaA protein in initiating replication of plasmids bearing the origin of the E. coli chromosome. Cell 50: 259265.
  • Simmons, L.A., Felczak, M., and Kaguni, J.M. (2003) DnaA protein of Escherichia coli: oligomerization at the E. coli chromosomal origin is required for initiation and involves specific N-terminal amino acids. Mol Microbiol 49: 849858.
  • Skarstad, K., and Boye, E. (1994) The initiator protein DnaA: evolution, properties and function. Biochim Biophys Acta 1217: 111130.
  • Skarstad, K., Boye, E., and Steen, H.B. (1986) Timing of initiation of chromosome replication in individual Escherichia coli cells. EMBO J 5: 17111717.
  • Speck, C., Weigel, C., and Messer, W. (1997) From footprint to toeprint. a close-up of the DnaA box, the binding site for the bacterial initiator protein DnaA. Nucleic Acids Res 25: 32423247.
  • Sun, L., Jacobson, B.A., Dien, B.S., Srienc, F., and Fuchs, J.A. (1994) Cell cycle regulation of the Escherichia coli nrd operon: requirement for a cis-acting upstream AT-rich sequence. J Bacteriol 176: 24152426.
  • Weigel, C., Schmidt, A., Ruckert, B., Lurz, R., and Messer, W. (1997) DnaA protein binding to individual DnaA boxes in the Escherichia coli replication origin oriC. EMBO J 16: 65746583.
  • Wold, S., Boye, E., Slater, S., Kleckner, N., and Skarstad, K. (1998) Effects of purified SeqA protein on oriC-dependent DNA replication in vitro. EMBO J 17: 41584165.
  • Wold, S., Crooke, E., and Skarstad, K. (1996) The Escherichia coli Fis protein prevents initiation of DNA replication from oriC in vitro. Nucleic Acids Res 24: 35273532.
  • Wu, F., Wu, J., Ehley, J., and Filutowicz, M. (1996) Preponderance of Fis-binding sites in the R6K gamma origin and the curious effect of the penicillin resistance marker on replication of this origin in the absence of Fis. J Bacteriol 178: 49654974.