SEARCH

SEARCH BY CITATION

References

  • Agrawal, G.K., Yamazaki, M., Kobayashi, M., Hirochika, R., Miyao, A. and Hirochika, H. (2001) Screening of the rice viviparous mutants generated by endogenous retrotransposon Tos17 insertion. Tagging of a zeaxanthin epoxidase gene and a novel ostatc gene. Plant Physiol. 125, 12481257.
  • Anderson, A. and Moore, L. (1979) Host specificity in the genus Agrobacterium. Phytopathology, 69, 320323.
  • Bailey, M.A., Boerma, H.R. and Parrott. W.A. (1994) Inheritance of Agrobacterium tumefaciens-induced tumorigenesis of soybean. Crop Sci. 34, 514519.
  • Ballas, N. and Citovsky. V. (1997) Nuclear localization signal binding protein from Arabidopsis mediates nuclear import of Agrobacterium VirD2 protein. Proc. Natl. Acad. Sci. USA, 94, 1072310728.
  • Bartel, P., Chien, C., Sternglanz, R. and Fields. S. (1993) Elimination of false positives that arise in using the two-hybrid system. Biotechniques, 14, 920924.
  • Becker, J.D., Moreira, L.M., Kapp, D., Frosch, S.C., Puhler, A. and Perlic, A.M. (2001) The nodulin vfENOD18 is an ATP-binding protein in infected cells of Vicia faba L. nodules. Plant Mol. Biol. 47, 749759.
  • Benjamini, Y. and Hochberg, Y. (1995) Controlling the false discovery rate: a practical and powerful approach to multiple testing. J. R. Stat. Soc. Series B, 57, 289300.
  • Binns, A.N. (2002) T-DNA of Agrobacterium tumefaciens: 25 years and counting. Trends Plant Sci. 7, 231233.
  • Chateau, S., Sangwan, R.S. and Sangwan-Norreel, B.S. (2000) Competence of Arabidopsis thaliana genotypes and mutants for Agrobacterium tumefaciens-mediated gene transfer: role of phytohormones. J. Exp. Bot. 51, 19611968.
  • Chomczynski, P. and Sacchi, N. (1987) Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction. Anal. Biochem. 162, 156159.
  • Christie, P.J. and Vogel, J.P. (2000) Bacterial type IV secretion: conjugation systems adapted to deliver effector molecules to host cells. Trends Microbiol. 8, 354360.
  • Citovsky, V., Guralnick, B., Simon, M.N. and Wall, J.S. (1997) The molecular structure of Agrobacterium VirE2-single stranded DNA complexes involved in nuclear import. J. Mol. Biol. 271, 718727.
  • De La Cruz, F. and Lanka. E. (1998) T-complex formation and transfer to the plant cell. In Function of the Ti-Plasmid Vir Proteins (Spaink, H., Hooykaas, P. and Kondorosi, A., eds). Dordrecht: Kluwer Academic Press, pp. 281301.
  • Davison, A.C. and Hinkley, D.V. (1997) Bootstrap Methods and Their Application. New York: Cambridge University Press, pp. 100102.
  • DeCleene, M. and DeLey. J. (1976) The host range of crown gall. Bot. Rev. 42, 389466.
  • Delledonne, M., Zeier, J., Marocco, A. and Lamb, C. (2001) Signal interactions between nitric oxide and reactive oxygen intermediates in the plant hypersensitive disease resistance response. Proc. Natl. Acad. Sci. USA, 98, 1345413459.
  • Deng, W., Chen, L., Wood, D.W., Metcalfe, T., Liang, X., Gordon, M.P., Comai, L. and Nester, E.W. (1998) Agrobacterium VirD2 protein interacts with plant host cyclophilins. Proc. Natl. Acad. Sci. USA, 95, 70407045.
  • Ditt, R.F., Nester, E.W. and Comai, L. (2001) Plant gene expression response to Agrobacterium tumefaciens. Proc. Natl. Acad. Sci. USA, 98, 1095410959.
  • Dixon, D.P., Cummins, L., Cole, D.J. and Edwards, R. (1998) Glutathione-mediated detoxification systems in plants. Curr. Opin. Plant Biol. 3, 258266.
  • Durrenberger, F., Crameri, A., Hohn, B. and Koukolikova-Nicola, Z. (1989) Covalently bound VirD2 protein of Agrobacterium tumefaciens protects the T-DNA from exonucleolytic degradation. Proc. Natl. Acad. Sci. USA, 86, 91549158.
  • Edwards, R., Dixon, D.P. and Walbot, V. (2000) Plant glutathione S-transferases: enzymes with multiple functions in sickness and in health. Trends Plant Sci. 5, 193198.
  • Gachet, Y., Tournier, S., Lee, M., Lazaris-Karatzas, A., Poulton, T. and Bommer, U.A. (1999) The growth-related, translationally controlled protein P23 has properties of a tubulin binding protein and associates transiently with microtubules during the cell cycle. J. Cell Sci. 112, 12571271.
  • Gelvin, S. (2000) Agrobacterium and plant genes involved in T-DNA transfer and integration. Annu. Rev. Plant Physiol. Plant Mol. Biol. 51, 223256.
  • De Groot, M.J., Bundock, P., Hooykaas, P.J. and Beijersbergen, A.G. (1998) Agrobacterium tumefaciens-mediated transformation of filamentous fungi. Nat. Biotechnol. 16, 839842.
  • Gyorgyey, J., Vaubert, D., Jimenez-Zurdo, J.I., Charon, C., Troussard, L., Kondorosi, A. and Kondorosi, E. (2000) Analysis of Medicago truncatula nodule expressed sequence tags. Mol. Plant Microbe Interact. 13, 6271.
  • Hanano, S., Sugita, M. and Sugiura, M. (1996) Structure and expression of the tobacco nuclear gene encoding RNA-binding protein RZ-1: the existence of an intron in the 3′-untranslated region. DNA Res. 3, 6571.
  • Hansen, G. (2000) Evidence for Agrobacterium-induced apoptosis in maize cells. Mol. Plant Microbe Interact. 13, 649657.
  • Herrera-Estrella, A., Chen, Z.M., Van Montagu, M. and Wang, K. (1988) VirD proteins of Agrobacterium tumefaciens are required for the formation of a covalent DNA–protein complex at the 5′ terminus of T-strand molecules. EMBO J. 7, 40554062.
  • Hirochika, H., Otsuki, H., Yoshikawa, M., Otsuki, Y., Sugimoto, K. and Takeda, S. (1996) Autonomous transposition of the tobacco retrotransposon Tto1 in rice. Plant Cell, 4, 725734.
  • Hohnjec, N., Kuster, H., Albus, U., Frosch, S.C., Becker, J.D., Puhler, A., Perlick, A.M. and Fruhling, M. (2000) The broad bean nodulin VfENOD18 is a member of a novel family of plant proteins with homologies to the bacterial MJ0577 superfamily. Mol. Gen. Genet. 264, 241250.
  • Hood, E.E., Gelvin, S.B., Melchers, L.S. and Hoekema, A. (1993) New Agrobacterium helper plasmids for gene transfer to plant. Transgenic Res. 2, 208218.
  • Howard, E.A., Winsor, B.A., De Vos, G. and Zambryski, P. (1989) Activation of the T-DNA transfer process in Agrobacterium results in the generation of a T-strand-protein complex: tight association of VirD2 with the 5′ ends of T-strands. Proc. Natl. Acad. Sci. USA, 86, 40174021.
  • Hunt, P.W., Watts, R.A., Trevaskis, B., Llewelyn, D.J., Burnell, J., Dennis, E.S. and Peacock, W.J. (2001) Expression and evolution of functionally distinct haemoglobin genes in plants. Plant Mol. Biol. 47, 677692.
  • Ishida, S., Takahashi, Y. and Nagata, T. (1993) Isolation of cDNA of an auxin-regulated gene encoding a G protein beta subunit-like protein from tobacco BY-2 cells. Proc. Natl. Acad. Sci. USA, 90, 1115211156.
  • Kerr, M.K. and Churchill, G.A. (2001) Statistical design and the analysis of gene expression microarray data. Genet. Res. Camb. 77, 123128.
  • Kunik, T., Tzfira, T., Kapulnik, Y., Gafni, Y., Dingwall, C. and Citovsky, V. (2001) Genetic transformation of HeLa cells by Agrobacterium. Proc. Natl. Acad. Sci. USA, 98, 18711876.
  • Lee, L.Y., Gelvin, S.B. and Kado, C.I. (1999) pSa causes oncogenic suppression of Agrobacterium by inhibiting VirE2 protein export. J. Bacteriol. 181, 186196.
  • Lichtenstein, C. and Draper. J. (1986) DNA cloning: A practical approach. In Genetic Engineering of Plants, Vol. 2 (Glover, D.M., ed.).Washington, DC: IRL Press, pp. 67119.
  • Mager, W.H. (1988) Control of ribosomal protein gene expression. Biochim. Biophys. Acta. 949, 115.
  • Marrs, K.A. (1996) The functions and regulation of glutathione S-transferases in plants. Annu. Rev. Plant Physiol. Plant Mol. Biol. 47, 127158.
  • Mauro, A.O., Pfeiffer, T.W. and Collins. G.B. (1995) Inheritance of soybean susceptibility to Agrobacterium tumefaciens and its relationship to transformation. Crop Sci. 35, 11521156.
  • Mysore, K.S., Bassuner, B., Deng, X.B., Darbinian, N.S., Motchoulski, A., Ream, W. and Gelvin, S.B. (1998) Role of the Agrobacterium tumefaciens VirD2 protein in T-DNA transfer and integration. Mol. Plant Microbe Interact. 11, 668683.
  • Mysore, K.S., Nam, J. and Gelvin, S.B. (2000) An Arabidopsis histone H2A mutant is deficient in Agrobacterium T-DNA integration. Proc. Natl. Acad. Sci. USA, 97, 948953.
  • Nam, J., Matthysse, A.G. and Gelvin, S.B. (1997) Differences in susceptibility of Arabidopsis ecotypes to crown gall disease may result from a deficiency in T-DNA integration. Plant Cell, 9, 317333.
  • Nam, J., Mysore, K.S., Zheng, C., Knue, M.K., Matthysse, A.G. and Gelvin, S.B. (1999) Identification of T-DNA tagged Arabidopsis mutants that are resistant to transformation by Agrobacterium. Mol. Gen. Genet. 261, 429438.
  • Narasimhulu, S.B., Deng, X.B., Sarria, R. and Gelvin, S.B. (1996) Early transcription of Agrobacterium T-DNA genes in tobacco and maize. Plant Cell, 8, 873886.
  • Negrutskii, B.S. and El'skaya, A.V. (1998) Eukaryotic translation elongation factor 1 alpha: structure, expression, functions, and possible role in aminoacyl-tRNA channeling. Prog. Nucl. Acid Res. Mol. Biol. 60, 4778.
  • Ni, M., Cui, D., Einstein, J., Narasimhulu, S., Vergara, C.E. and Gelvin, S.B. (1995) Strength and tissue specificity of chimeric promoters derived from the octopine and mannopine synthase genes. Plant J. 7, 661676.
  • Okushima, Y., Koizumi, N., Kusano, T. and Sano, H. (2000) Secreted proteins of tobacco cultured BY2 cells: identification of a new member of pathogenesis-related proteins. Plant Mol. Biol. 42, 479488.
  • Owens, L.D. and Cress. D.E. (1984) Genotyping variability of soybean response to Agrobacterium strains harboring the Ti or Ri plasmids. Plant Physiol. 77, 8794.
  • Paiva, N.L. (2000) An introduction to the biosynthesis of chemicals used in plant–microbe communication. J. Plant Growth Regul. 19, 131143.
  • Peng, H.P., Chan, C.S., Shih, M.C. and Yang, S.F. (2001) Signaling events in the hypoxic induction of alcohol dehydrogenase gene in Arabidopsis. Plant Physiol. 126, 742749.
  • Piers, K.L., Heath, J.D., Liang, X., Stephens, K.M. and Nester, E.W. (1996) Agrobacterium tumefaciens-mediated transformation of yeast. Proc. Natl. Acad. Sci. USA, 93, 16131618.
  • Potenza, C., Thomas, S.H. and Sengupta-Gopalan, C. (2001) Genes induced during early response to Meloidogyne incognita in roots of resistant and susceptible alfalfa cultivars. Plant Sci. 161, 289299.
  • Rho, H.S., Kang, S. and Lee, Y.H. (2001) Agrobacterium tumefaciens-mediated transformation of the plant pathogenic fungus, Magnaporthe grisea. Mol. Cells, 12, 407411.
  • Robbs, S.L., Hawes, M.C., Lin, H.-J., Pueppke, S.G. and Smith. L.Y. (1991) Inheritance of resistance to crown gall in Pisum sativum. Plant Physiol. 95, 5257.
  • Robertson, D., Mitchell, G.P., Gilroy, J.S., Gerrish, C., Bolwell, G.P. and Slabas, A.R. (1997) Differential extraction and protein sequencing reveals major differences in patterns of primary cell wall proteins from plants. J. Biol. Chem. 272, 1584115848.
  • Rossi, L., Hohn, B. and Tinland, B. (1996) Integration of complete transferred DNA units is dependent on the activity of virulence E2 protein of Agrobacterium tumefaciens. Proc. Natl. Acad. Sci. USA, 93, 126130.
  • Sambrook, J., Fritsch, E.F. and Maniatis, T. (1989) Molecular Cloning: a Laboratory Manual. Cold Spring Harbor: Cold Spring Harbor Laboratory Press.
  • Sanchez, J.C., Schaller, D., Ravier, F., Golaz, O., Jaccoud, S., Belet, M., Wilkins, M.R., James, R., Deshusses, J. and Hochstrasser, D. (1997) Translationally controlled tumor protein: a protein identified in several nontumoral cells including erythrocytes. Electrophoresis, 18, 150155.
  • Schrammeijer, B., Risseeuw, E., Pansegrau, W., Regensburg-Tuink, T.J., Crosby, W.L. and Hooykaas, P.J. (2001) Interaction of the virulence protein VirF of Agrobacterium tumefaciens with plant homologs of the yeast Skp1 protein. Curr. Biol. 11, 258262.
  • Seregelyes, C., Mustardy, L., Ayaydin, F. et al. (2000) Nuclear localization of a hypoxia-inducible novel non-symbiotic hemoglobin in cultured alfalfa cells. FEBS Lett. 482, 125130.
  • Sheng, J. and Citovsky, V. (1996) Agrobacterium-plant cell DNA transport: have virulence proteins, will travel. Plant Cell, 8, 16991710.
  • Showalter, A.M. (1993) Structure and function of plant cell wall proteins. Plant Cell, 5, 923.
  • Silva, H., Yoshioka, K., Dooner, H.K. and Klessig, D.F. (1999) Characterization of a new Arabidopsis mutant exhibiting enhanced disease resistance. Mol. Plant Microbe Interact., 12, 10531063.
  • Smarrelli, J., Watters, M.T. and Diba, L.H. (1986) Response of various cucurbits to infection by plasmid-harboring strains of Agrobacterium tumefaciens. Plant Physiol. 82, 622624.
  • Szegedi, E. and Kozma. P. (1984) Studies on the inheritance of resistance to crown gall disease of grapevine. Vitis, 23, 121126.
  • Takahashi, Y. and Nagata, T. (1992) parB: an auxin-regulated gene encoding glutathione S-transferase. Proc. Natl. Acad. Sci. USA, 89, 5659.
  • Takahashi, Y., Kuroda, H., Tanaka, T., Machida, Y., Takebe, I. and Nagata, T. (1989) Isolation of an auxin-regulated gene cDNA expressed during the transition from G0 to S phase in tobacco mesophyll protoplasts. Proc. Natl. Acad. Sci. USA, 86, 92799283.
  • Tzfira, T. and Citovsky, V. (2002) Partners-in-infection: host proteins involved in the transformation of plant cells by Agrobacterium. Trends Cell Biol. 12, 121129.
  • Tzfira, T., Rhee, Y., Chen, M.H., Kunik, T. and Citovsky, V. (2000) Nucleic acid transport in plant–microbe interactions: the molecules that walk through the walls. Annu. Rev. Microbiol. 54, 187219.
  • Tzfira, T., Vaidya, M. and Citovsky, V. (2001) VIP1, an Arabidopsis protein that interacts with Agrobacterium VirE2, is involved in VirE2 nuclear import and Agrobacterium infectivity. EMBO J. 20, 35963607.
  • Wagner, V.T. and Matthysse, A.G. (1992) Involvement of a vitronectin-like protein in attachment of Agrobacterium tumefaciens to carrot suspension culture cells. J. Bacteriol. 174, 59996003.
  • Wang, H.L., Lee, P.D., Chen, W.L., Huang, D.J. and Su, J.C. (2000) Osmotic stress-induced changes of sucrose metabolism in cultured sweet potato cells. J. Exp. Bot. 51, 19911999.
  • Yi, H.C., Mysore, K.S. and Gelvin, S.B. (2002) Expression of the Arabidopsis histone H2A-1 gene correlates with susceptibility to Agrobacterium transformation. Plant J. 32, 285298.
  • Young, C. and Nester, E.W. (1988) Association of the VirD2 protein with the 5′ end of T strands in Agrobacterium tumefaciens. J. Bacteriol. 170, 33673374.
  • Yusibov, V.M., Steck, T.R., Gupta, V. and Gelvin, S.B. (1994) Association of single-stranded transferred DNA from Agrobacterium tumefaciens with tobacco cells. Proc. Natl. Acad. Sci. USA, 91, 29942998.
  • Ziemienowicz, A., Tinland, B., Bryant, J., Gloeckler, V. and Hohn, B. (2000) Plant enzymes but not Agrobacterium VirD2 mediate T-DNA ligation in vitro. Mol. Cell. Biol. 20, 63176322.
  • Zupan, J.R. and Zambryski, P. (1995) Transfer of T-DNA from Agrobacterium to the plant cell. Plant Physiol. 107, 10411047.
  • Zupan, J. and Zambryski, P. (1997) The Agrobacterium DNA transfer complex. Crit. Rev. Plant Sci. 16, 279295.
  • Zupan, J., Muth, T.R., Draper, O. and Zambryski, P. (2000) The transfer of DNA from Agrobacterium tumefaciens into plants: a feast of fundamental insights. Plant J. 23, 1128.