A series of endosperm transfer layer-specific transcripts has been identified in maize by differential screening of a cDNA library of transcripts at 10 days after pollination. Sequence comparisons revealed among this class of cDNAs a novel, small gene family of highly diverged sequences encoding basal layer antifungal proteins (BAPs). The bap genes mapped to two loci on chromosomes 4 and 10. So far, bap-homologous sequences have been detected only in maize, teosinte and sorghum, and are not present in grasses outside the Andropogoneae tribe. BAP2 is synthesized as a pre-proprotein, and is processed by successive removal of a signal peptide and a 29-residue prodomain. The proprotein can be detected exclusively in microsomal membrane-containing fractions of kernel extracts. Immunolocalization reveals BAP2 to be predominantly located in the placentochalazal cells of the pedicel, adjacent to the basal endosperm transfer layer (BETL) cells, although the BAP2 transcript is found only in the BETL cells. The biological roles of BAP2 propeptide and mature peptide have been investigated by heterologous expression of the proprotein in Escherichia coli, and by tests of its fungistatic activity and that of the fully processed form in vitro. The mature BAP2 peptide exhibits potent broad-range activity against a range of filamentous fungi, including several plant pathogens.
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The developing cereal grain is adapted for rapid nutrient assimilation by the development of a transfer layer. In maize these cells, which form a disc in the basal endosperm corresponding to the area of attachment to the pedicel, are highly modified by the development of cell-wall projections on the basal cell surface (Davis et al., 1989). A series of basal endosperm transfer layer-specific cDNA clones (termed BETL1-x) have been isolated by differential screening of immature kernel cDNA libraries (Hueros et al., 1995; Hueros et al., 1999). The four most abundant BETL clones, BETL1 to -4, encode small polypeptides with Mr between 8 and 10 kDa. These proteins have no close relatives in database accessions, but two of them, BETL1 and BETL3, show some similarity to the defensin supergene family of antimicrobial peptides (Hueros et al., 1999; Terras et al., 1995). Of the remaining BETL clones, BETL4 has some similarities to the Bowman-Birk family of trypsin inhibitors (Hueros et al., 1999), whereas BETL2 lacks close databank relatives.
In an extended screen for maize endosperm transfer layer-specific clones, we have now identified additional basal endosperm-specific cDNAs related to BETL2, which together define a novel gene family. In the light of their restricted distribution and biological properties, we have called these proteins BAPs (basal layer type antifungal proteins), and the corresponding loci bap1, bap2 and bap3. BAP transcripts accumulate between 8 and 20 days after pollination (DAP). BAP2 (previously termed BETL2) protein follows a similar time-course of appearance (Hueros et al., 1999); it turns over by mid-term development and is absent from mature kernels, suggesting a role in development rather than in maturation or germination. We report investigations of the biological function of BAP2 which show it to be a potent antifungal agent that is secreted into the intercellular matrix of the basal endosperm and accumulates predominantly in the adjacent, thick-walled cell layer of the pedicel, the placentochalaza. BAP2 presumably protects the zygote from pathogen ingress through the nutrient-rich basal endosperm cells. BAP2 is a member of a new family of peptides having a putative antimicrobial role, with a structure and mode of activation distinguishing it from the previously characterized families (Garcia-Olmedo et al., 1998).
Classification of a family of transfer layer-specific transcripts
10358 cDNA clones from a 10 DAP endosperm library were gridded onto nylon filters and screened with 32P-labelled cDNA prepared from 10 DAP top and bottom endosperm half mRNA. Sequences more highly expressed in bottom than in top endosperm RNA were sequenced and compared to existing sequence database accessions. As a result of sequencing 100 clones preferentially or exclusively expressed in bottom, as compared with top, endosperm, six cDNAs were identified that were related to BAP2 using blast searches. Pairwise comparisons of the six selected sequences were carried out in blast2, using the default conditions (Tatusova and Madden, 1999) (Table 1). These sequences were also aligned using the programme clustalw (Thompson et al., 1994), as shown in Figure 1. The corresponding proteins were termed BAPs, and the loci corresponding to the three subgroups of clones were termed bap1, bap2 (previously BETL2) and bap3 (1Table 2). Inspection of the aligned sequences showed a block of conserved residues in the signal peptide and adjacent prodomain region, with three further conserved residues (Leu, Tyr, Thr) clustered around four cysteines in the COOH-terminal 35 amino acids. An attempt to align BAP sequences with plant defensins indicated, despite the presence of four aligned cysteine residues, that the characteristic defensin motif (Conceicao and Broekaert, 1999), CXXXC-GXC-CXC, was not preserved (not shown). BAPs are also unrelated in sequence to a previously reported antimicrobial peptide from maize kernels (Duvick et al., 1992).
Table 1. Random matching probabilities for pairwise matched BAP amino acid sequences using blast2 (Tatusova and Madden, 1999)
Table 2. Suggested nomenclature for the basal layer-type antifungal protein family
Clone working name
Ch. 10L, interval 53–55
Ch. 10L, interval 53–55
Ch. 4, co-ordinate 62–60
Ch. 10L, interval 53–55
Ch. 10L, interval 53–55
The distribution of BAP family members among members of the Poaceae was investigated by Southern hybridizations with BAP1a and BAP3a probes (Figure 2). As both the (BAP1a and BAP1b) and (BAP3a and BAP3b) pairs have 95% DNA sequence homology with one another and cross-hybridize at high stringency, only BAP1a and BAP3a were used as probes. A single hybridizing band was seen for each probe in Sorghum (Sorghum bicolor) DNA, whereas Teosinte (Zea luxurians) contained two bands for each probe, as did domesticated maize, Zea mays (line A69Y). Neither barley nor wheat DNA gave detectable signals with either probe. Similar results have been obtained for BAP2 (Hueros et al., 1999).
Accumulation of BAP family transcripts during endosperm development.
Samples of mRNA (2 µg) from kernels harvested between 7 and 27 DAP were fractionated by electrophoresis in denaturing formaldehyde gels, blotted onto nylon filters, and hybridized with BAP1a, 1b, 3a, and 3b probes (Figure 3a). Transcripts were evident from 10 to 18 DAP with quantitative variations between the probes. From 20 DAP onwards, transcripts were either undetectable or present only in trace amounts. The specificity of expression of BAP1a, 1b, 3a and 3b genes was monitored by Northern analysis of RNAs from endosperm, leaf, root, shoot and silk tissues (Figure 3b). In all four cases, signal was seen only in the endosperm RNA sample. The timing and specificity of expression of BAP1 and BAP3 transcripts therefore corresponded to that seen previously for BAP2 (Hueros et al., 1999).
Cell-type localization of BAP transcripts and BAP2 protein
All the BAP family members identified are restricted in their expression to the endosperm, and accumulate only during mid-term endosperm development according to Northern blot analyses using RNAs from different tissues (Figure 3). Using one member of each of the newly identified sequence classes (bap1 and bap3) for in situ hybridization revealed expression of both to be exclusively in the basal endosperm transfer layer (Figure 4), as also reported for bap2 (Hueros et al., 1999). Thus both the site and the timing of expression in the kernel are similar for all three BAP-class cDNAs.
Cell-type and subcellular localization of BAP2
The localization of BAP2 protein was carried out to check whether the site of deposition coincides with that of the mRNA. Wax-embedded sections from different developmental stages were immunodecorated with pre-immune serum (Figure 5a) or with anti-BAP2 antibody (Figure 5b), and detected with peroxidase Diaminobenzidene (DAB) staining. The protein was detected as expected in the basal endosperm cells. However, a strong signal was also seen in the placentochalazal layer of the pedicel. Control sections stained with pre-immune serum gave no signal in these cell layers. The results indicate that BAP2 protein is synthesized in the basal endosperm transfer-layer cells and quantitatively deposited in the placentochalaza.
To locate the BAP2 protein more precisely, and to gain insight into the post-translational route taken during deposition, the protein was detected by immunogold labelling and analysed by transmission electron microscopy. Thin (100 nm) sections of 15 DAP kernels embedded in LR-white resin were visualized without OsO4 shadowing (Wells, 1985). BAP2 antibody was detected with a secondary antibody coupled to 15 nm gold particles. The strongest signal was in the pedicel, at the site of the placentochalazal cells, as shown by light microscopy. These cells displayed little intracellular structure, and only rarely was a nucleus seen after 12 DAP. The cell walls were thickened and cytoplasmic structure was absent, that is, the cytosol is probably metabolically inactive. Within the endosperm the first transfer-cell layer, which is largely occupied by cell-wall material by 15 DAP, was relatively weakly labelled. The second layer of endosperm cells labelled much more heavily. These cells possessed a dense cytoplasm lacking large vacuoles. The cells were rich in mitochondria and cell-wall ingrowths, although the latter were less developed than in the first cell layer. The BAP2 protein was located principally at the cell wall/plasma membrane interface of the wall ingrowths (Figure 5, right panel). It was also detected more weakly in membraneous inclusions corresponding to the rough endoplasmic reticulum or golgi vesicles.
Distribution of BAP2 protein forms in basal kernel tissues
The BAP2 open reading frame minus the putative signal peptide (residues 27–95 in Figure 1) was expressed with a COOH-terminal His-tag fusion in pQE60. The construct was used to prepare BAP2 protein to use as an antigen for raising antiserum in rabbits. This antiserum recognizes two polypeptides on immunoblots (arrowed in Figure 6a), of apparent sizes 8 and 4.5 kDa. The 8 kDa band can be resolved into a doublet of two closely migrating polypeptides. Immunoaffinity chromatography-purified peptides were gel-purified and submitted to NH2-terminal sequencing. The 8 kDa peptide yielded the sequence RTTSGQTK, and the 4.5 kDa peptide possessed the sequence NDDGPCYLDS. From the location of these peptides in the predicted coding sequence (beginning at the arrowheads in Figure 1), we deduced that BAP2 is post-translationally processed in at least two steps: the removal of the signal peptide gives the 8 kDa propeptide; and the cleavage of the 31-residue prodomain from this peptide gives the 4.5 kDa mature peptide.
To obtain biochemical evidence for the localization of BAP2 protein in the pedicel, basal endosperm and pedicel tissues were hand-dissected under the binocular microscope, and proteins extracted and analysed by immunoblotting (Figure 6a). As a control for the separation of pedicel and basal endosperm cells, the filter was probed with BETL1 antiserum. BETL1 is synthesized and located in basal endosperm cells where it is tightly cell-wall bound, and is not synthesized or relocated in the pedicel (Hueros et al., 1995). Only traces of BETL1 were detected in the pedicel protein extract (Figure 6a). The 8 kDa BAP2 propeptide is much more abundant in the basal endosperm extract than in the pedicel, whereas the 4.5 kDa mature peptide is more highly represented in the pedicel extract. Presumably the pedicel accumulates only the fully processed form of BAP2, which partitions into the placentochalazal zone after secretion into the apoplast by the basal endosperm cells. This would be consistent with the lack of BAP2 mRNA in pedicel cells.
The predominant location of BAP2 in the cell wall (Figure 5) is supported by analysis of subcellular fractions from cell lysates (Figure 6b). The mature BAP2 peptide was predominantly in the fraction corresponding to a crude cell-wall preparation (CW in Figure 6), and was not recovered in 1000 g (crude nuclear, P1) or 6000 g (crude organellar, P2) pellets. The propeptide, on the other hand, was enriched in the 80 000 g microsomal pellet, whereas the supernatant from this centrifugation step (S3) contained only the mature form of BAP2.
Evidence for a BAP2 processing enzyme in maize endosperm
To characterize the protease responsible for removal of the prodomain from the BAP2 propeptide, the protein was synthesized in Escherichia coli (with a C-terminal His tag), and purified for in vitro protease incubations. As the E. coli His-tag fusion protein was deposited in inclusion bodies, the protein was extracted under denaturing conditions with urea, eluted from nickel–agarose columns with a gradient of increasing urea concentration (Shi et al., 1997), and renatured by dialysis.
The recombinant propeptide was incubated in a size-fractionated (>200 kDa) endosperm extract to bring about processing to the mature peptide form. By testing pH values in 0.5 pH unit increments, a pH optimum of 7 for protease activity was determined (data not shown). The effect at pH 7 of different classes of protease inhibitors on propeptide cleavage was then investigated (Figure 6c). The protease was inactivated by boiling, but was not affected by most of the inhibitors tested, with the exception of a commercial inhibitor mix containing phenylmethylsulphonylfluoride (PMSF) or this reagent alone. Inhibition by PMSF indicates that a serine-type protease is responsible for the cleavage. The lack of inhibition by Tosyl-l-phenylalanine-chloromethylketone and Tosyl-l-lysine-chloromethylketone, however, suggested the protease was not of the trypsin or chymotrypsin class of serine proteases.
Antifungal properties of the purified BAP2 protein
The antifungal properties of the purified BAP2 protein and its undigested form, BAP2 propeptide, were compared by determining protein concentrations required for 50% inhibition of fungal growth (IC50 values). Eight fungi were included in the assay: the saprophytic soil fungus Neurospora crassa and the phytopathogenic fungi Alternaria brassicicola, Aspergillus flavus, Botrytis cinerea, Fusarium culmorum, Fusarium moniliforme, Plectosphaerella cucumerina and Verticillium dahliae. Aspergillus flavus and F. moniliforme are maize pathogens. The antifungal activity assays were carried out in two media: 0.5 potato dextrose broth (PDB), and 0.5 PDB supplemented with 1 mm CaCl2 and 50 mm KCl. The results are shown in Table 3. In the medium without the addition of salts, IC50 values of BAP2 were generally in the 2–5 µg ml−1 range, except for B. cinerea which was sensitive to BAP2 at concentrations starting from 20 µg ml−1. In addition, BAP2 propeptide showed no antifungal activity at concentrations up to 80 µg ml−1, except on N. crassa and P. cucumerina, for which BAP2 propeptide showed a very weak antifungal activity starting from 80 µg ml−1. The effect of salts on the antifungal activity of the BAP2 protein was largely dependent on the test fungus. In general, addition of salts to the medium decreased the activity of the BAP2 protein by a factor of four- to sixfold. Sensitivity of antifungal activity to inorganic cations has been reported for a number of proteins, including the plant defensins (Osborn et al., 1995; Terras et al., 1992).
Table 3. Antifungal activity of BAP2 and BAP2 propeptide against various fungal strains
a IC50 values (concentration of BAP protein required to inhibit 50% of fungal growth) were determined from dose–response curves with twofold dilution steps. nd = Not determined.
Medium A = 0.5 PDB.
c Medium B = 0.5 PDB supplemented with 1 mm CaCl2 and 50 mm KCl.
Membrane permeabilization induced by BAP2 protein
To investigate the mechanism of fungal growth inhibition by BAP2, fungal membrane permeabilization in the presence of BAP2 was studied. To this end, an assay based on the uptake of SYTOX Green was used, as described by Thevissen et al. (1999). SYTOX Green is an organic compound that fluoresces upon interaction with nucleic acids, and only penetrates cells with compromised plasma membranes (Matsuzaki et al., 1997; Roth et al., 1997). Membrane permeabilization to SYTOX in the presence of BAP2 and BAP2 propeptide was assessed for N. crassa and F. culmorum. As can be seen in Figure 7, SYTOX Green uptake in F. culmorum and N. crassa rose significantly upon treatment with BAP2 at concentrations above 2 and 5 µg ml−1, respectively, which correlates well with the concentrations required for growth inhibition. In contrast, treatment with BAP2 propeptide did not inhibit growth of these fungi, and also failed to cause permeabilization to SYTOX Green.
BAP2 belongs to a highly divergent family of basal endosperm-specific proteins
A comparison of the predicted coding sequences of BAP2-related clones indicates that the most extensive homologies lie in the COOH-terminal half of the signal peptide and the prodomain. The mature peptides, extrapolated from the processing site demonstrated for BAP2, contain only six residues (four cysteine, one tyrosine and one threonine) which are present in all the BAP sequences compared. It was not possible to align these residues unambiguously with those of plant defensin sequences, and in particular, the defensin motif was absent. The extensive sequence divergence seen for the bap family is commonly seen within families of plant antipathogenic peptides (Broekaert et al., 1997; Conceicao and Broekaert, 1999; Garcia-Olmedo et al., 1998) in which sequence conservation appears to reflect maintenance of a secondary structure without a catalytic function. A comparable extreme sequence divergence exists among families of non-plant cytotoxin genes, for example those encoding conotoxins (Duda and Palumbi, 1999).
The newly isolated bap1a and bap1b, and bap3a and bap3b, gene family members were mapped to chromosomal loci using recombinant inbred lines (Burr et al., 1994). All four cDNAs co-segregated to a locus on chromosome 10, unlinked to bap2 itself, which has previously been mapped to Ch. 4 (maize genome database at http://www.agron.missouri.edu/cgi-bin/sybgw_mdb/mdb3/Map/64506). If we assume bap1a and bap1b clones are allelic variants at one locus, and that the same applies to bap3a and bap3b, two co-segregating genes, bap1 and bap3, must be represented. As all four cDNAs arose from an inbred line (B73), however, and two fragments are seen in Southern blots with each probe, it is likely that the cDNAs represent four different cistrons at the locus. Multiple closely related cistrons seem to be typical for defensin-like peptides. The BETL1 locus (Hueros et al., 1999), encoding a maize defensin-like protein, contains three tandem gene copies, and a cluster of five defensin genes is located within 450 kb on human chromosome 8p23 (Linzmeier et al., 1999).
It is of interest to speculate how the BAP gene family has arisen and, in view of the putative role of BAPs in plant defence, to try to establish the overall family size and extent of diversity represented in it. The restriction of BAP sequences to maize, sorghum and teosinte implies that the founder member of the BAP gene class arose in a common progenitor of the Zea and Sorghum groups in the tribe Andropogoneae. In this connection, it is intriguing that the proximity of bap1 and bap3 on chromosome 10 has been maintained, although sequence divergence between the two sequences is extensive (random matching probabilities of 1.e−7−1.e−10). It is possible that the divergence is a consequence of positive selection for resistance to evolving fungal pathogen populations.
BAP2 protein is detected in two cellular locations
An immunocytochemical localization indicated that BAP2 is accumulated at two sites in the developing caryopsis: the transfer layer and the placentochalaza. Presumably the placentochalazal cell walls preferentially bind apoplastic BAP2 which diffuses from the site of synthesis. It may be that BAP2 can more effectively carry out its role of inhibition of fungal infection if it is located in the maternal tissue, as the orientation of the placentochalazal cell walls perpendicular to the direction of hyphal growth into the endosperm may be a more effective physical barrier and ensure prolonged contact with the cytotoxic proteins. By sequestering the protein in the sieve element-like placentochalazal cells, possible damage to the plasma membranes of other cells may also be reduced. Turnover of the protein, which takes place well before kernel maturity, may also be facilitated by this location.
Cells of the transfer layer contain secretory vesicles, and other proteins are secreted at high concentrations into the cell walls where they may be tightly bound, as seen for BETL1 (Hueros et al., 1995). BAP2 protein, in contrast, is not tightly bound. Although accumulating in the cell-wall fraction, it can be readily eluted from cell-wall preparations under low salt conditions (Figure 6b). Sugar and amino acid uptake into transfer cells occurs via H+-importing symporters. It is possible that release of high concentrations of BAP2 by these cells contributes to the regulation of extracellular pH, and thereby solute flux.
Processing of BAP2
Antiserum raised to E. coli-expressed BAP2 protein detects two peptides, of 8 and 4.5 kDa, in endosperm extracts. Protein sequencing revealed that the 4.5 kDa peptide is derived from the 8 kDa species by proteolytic cleavage. Subcellular fractionation of endosperm homogenates showed the 8 kDa peptide to be restricted to microsomal membrane fractions (Figure 6b). In contrast, the mature peptide was recovered from the 80 000 g supernatant, that is, it is not membrane-bound. These findings suggest the processing event giving rise to the mature 4.5 kDa species takes place within the trans-Golgi network (TGN). Similar processing events are seen for other secreted antimicrobial proteins including 4-Cys peptides (Tailor et al., 1997) and proteinase inhibitors (Atkinson et al., 1993). In contrast, vacuolar processing events are involved in the maturation of vicilin-class seed-storage proteins (Jung et al., 1998), although some of the products can also be further cleaved during germination to yield antimicrobial peptides (Chung et al., 1997; Marcus et al., 1999). Thionine precursors were processed in barley leaves by a vacuolar proteinase to give a 5 kDa N-terminal peptide with antifungal properties, and a 6.8 kDa C-terminal peptide which is degraded in vivo (Romero et al., 1997). The proteinase responsible differed in its site specificity and inhibitor sensitivity from that reported for vicilin maturation.
Incubation of endosperm extracts with a series of protease inhibitors (Figure 6c) indicates that a serine-type protease is responsible for propeptide cleavage. In contrast to reported substrates for the TGN-localized Kex2-like protease of plants, which is also a serine protease (Jiang and Rogers, 1999), BAP2 does not possess two adjacent basic residues at the predicted cleavage site (Figure 1). There is little conservation of sequence among BAP proteins at the BAP2 proteolytic cleavage site, suggesting that site specificity may be conferred at the tertiary structure level, for example by the formation of an exposed loop prone to cleavage.
Mechanism of action of BAP2
The production of a mature peptide by propeptide processing has been directly demonstrated for BAP2 and BAP1 (A.S., unpublished results) of the BAP proteins analysed to date. Synthesis as a propeptide may protect the host cells from possible cytotoxic action; the processing event may also provide a regulatory step in response to pathogen ingress. A pathogen-induced form of the Kex-like plant protease has been identified (Tornero et al., 1996), which could mediate such a regulation. The effect of the maturation step on the biological activity of BAP2 (Table 3) is dramatic, converting it to a potent plant antifungal protein. We have estimated a BAP2 concentration of 10 µm in the transfer layer at 16 DAP, which is comparable to the IC50 values for susceptible fungal species in the bioassay. The biological activity in vivo is also likely to be further potentiated by combinatorial effects with other transfer layer-specific antimicrobial proteins such as BETL1 and BETL3.
Evidence that BAP2 acts by disrupting plasma membrane integrity was provided by incubation of BAP2-treated fungal cultures in the presence of SYTOX Green, a dye that is taken up only by cells possessing permeabilized membranes (Roth et al., 1997). The mode of action of BAP2 therefore involves damage to the fungal plasma membrane, as is seen for other antifungal plant proteins such as the plant defensins (Thevissen et al., 1999). Experiments reported here do not allow us to further define a membrane target or mechanism. Fusarium species are reported to spread in planta by movement of conidia through phloem vessels. Therefore secretion of an antifungal protein into the placentochalaza may prevent the passage of conidia to the endosperm, and may be an effective way of preventing the initiation of an infection there.
Proteins were fractionated by SDS–PAGE electrophoresis according to Laemmli (1970), and electroblotted onto polyvinylidine difluoride (PVDF) membranes in a tank blotter. Proteins were detected using enhanced chemiluminescence (ECL, Amersham, UK) and either exposure to NAR-5 X-ray film (Kodak) or, for quantification, image capture using the Lumi-imager (Boehringer, Roche Diagnostics, Mannheim, Germany).
Purification of BAP2 forms by immunoaffinity chromatography and NH2-terminal sequencing
To extract cytoplasmic proteins, 12–15 DAP maize kernels were ground in a Waring blender with a minimum volume of extraction buffer (20 mm sodium phosphate pH 7.1, 1 mm EDTA, 1 mm phenylmethylsulphonylfluoride (PMSF), and 1 µg ml−1 proteinase inhbitors (pepstatin, leupeptin and aprotinin). The debris was removed by centrifugation at 100 000 g, 4°C for 1 h.
BAP2 antiserum and the corresponding pre-serum were bound to AffiGel-10 beads (BioRad, München, Germany), according to the supplier's recommendations. 1.5 ml of antiserum was used for 1 ml of resin. For immunoprecipitation, solutions were brought to 200 mm NaCl and 0.2% Triton X-100. Affigel-10-bound antisera were added at a 1 : 50-fold dilution, and proteinase inhibitors to 1 µg ml−1, as before. The mixture was shaken gently at 4°C for 3 h. After incubation, the resin was packed into a column and washed with 80 volumes of buffer I (20 mm sodium phosphate pH 7, 1 mm EDTA, 1 mm PMSF, 200 mm NaCl, 0.2% Triton X-100, 1 µg ml−1 proteinase inhibitors as before), followed by 100–200 column volumes of buffer II (20 mm sodium phosphate pH 7, 1 mm EDTA, 1 mm PMSF, 1 µg ml−1 proteinase inhibitors), until the A280 of the eluant was zero. Bound proteins were then eluted with 1 ml aliquots of ice-cold 200 mm glycine pH 2.7, and immediately neutralized with 1/20th volume of 2 m Tris base. Proteins were separated by electrophoresis on a 16% SDS–PAGE gel, and electroblotted onto Immobilon–PVDF membrane (Millipore, Eschborn, Germany). The membrane was stained with Coomassie Blue, and destained for 10 min with 10% v/v acetic acid before excising bands for sequencing.
BAP2 isolation, refolding and digestion
BAP2 was purified and denatured using the COOH-terminal His tag. The protein in inclusion bodies was redissolved in 6 m guanidine–HCl/0.2 m acetic acid. To refold the protein, the solution was first diluted 1 : 1 with 8 m urea, 0.1 m Na2HPO4 and 0.01 m Tris pH 8.0. Then the preparation was dialysed against (4 m urea, 0.1 m Na2HPO4, 0.01 m Tris pH 8.0), two changes, for 16 h; (4 m urea, 0.1 m Na2HPO4, 0.01 m Tris pH 8.0), two changes for 8 h; 3 × 0.1 m Tris pH 8.0 for 16 h; and 3 × H2O for 16 h. Digestion was carried out in 0.8 ml 0.2 ml 1 m potassium phosphate pH 7.10, 4 µl 0.25 m EDTA pH 8.0 containing BAP2 at 1–3 mg ml−1. To this was added 40 µl aliquots of a >200 kDa fraction from a non-denaturing extract of 15–16 DAP maize kernels prepared in 20 mm potassium phosphate pH 6.0, 1 mm EDTA, 10 mm 2-mercaptoethanol. The solution was incubated at 37°C until the digestion had reached >90%. The preparation was purified by size-fractionation on a Superose-12 column in the same buffer. Fractions containing BAP2 were located by immunoblotting, pooled, dialysed against water, and concentrated by lyophilization.
Maize kernels were fixed in 4% paraformaldehyde, 0.1% glutaraldehyde in 0.1 m sodium phosphate buffer pH 7.2, for 12–24 h, depending on the tissue volume. Samples were dehydrated and embedded in lowycryl for electron microscopy or fibrowax for light microscopy (Plano GmbH, Marburg, Germany). For light microscopy immunolocalization, sections (8–10 µm) were deparaffinized and blocked with 1% bovine serum albumin in PBS (10 mm sodium phosphate, 150 mm NaCl pH 7.4) for 20 min at room temperature, and incubated overnight with anti-BAP2 antiserum or pre-immune serum (both diluted 1 : 400). The immunoreaction was detected using horseradish peroxidase-coupled second antibody (Sigma A6154; diluted 1 : 800) and 3-3′-diaminobenzidine as the substrate. For immunolocalization by electron microscopy, grids were incubated for 1 h with anti-BAP2 or pre-immune serum (both diluted 1 : 1000). The second antibody was coupled to 10 nm gold particles (Sigma G7402) and sections were counterstained with saturated uranyl acetate for 30 min.
In situ hybridization
Immature (15 DAP) maize kernels were fixed in 4% formaldehyde, 0.1% glutaraldehyde in 0.1 m sodium phosphate pH 7.2 for 16 h. Seeds were dehydrated in a graded ethanol–xylene series and embedded in fibrowax (Plano GmbH). Thick sections (10 µm) were cut using a microtome (Reichler-Jung, Nussloch, Germany) and then transferred to glass slides that had been treated with 3-aminopropyltriethoxylane.
Digoxigenin-labelled antisense and sense probes were synthesized using T3 and T7 polymerases (Boehringer-Mannheim, Germany) and partially hydrolysed (200 bases) with sodium carbonate. In situ hybridization was carried out essentially as described by De Block and Debrouwer (1993). Before hybridization the sections were deparaffinized and treated with 5 µg ml−1 proteinase K (Merck, Darmstadt, Germany). Mounted slides were incubated with 40–80 ng RNA per slide for 16 h at 50°C. After hybridization, the sections were incubated with 40 µg ml−1 RNase A at 37°C for 10 min and washed several times in 2 × standard saline phosphate EDTA (SSPE). For immunological detection, the sections were subsequently treated with 0.5% (w/v) blocking reagent (Boehringer-Mannheim) and 1% (w/v) BSA in TNT (100 mm Tris–HCl pH 7.5, 150 mm NaCl and 0.3% (v/v) Triton X-100). Following the blocking reaction, sections were incubated with antidigoxigenin–alkaline phosphatase conjugate (Boehringer-Mannheim, 1 : 3000 dilution) in 1% BSA solution at room temperature for 1 h, washed several times, and rinsed with alkaline phosphatase buffer (100 mm Tris–HCl pH 9.5, 100 mm NaCl, 50 mm MgCl2). The colour reaction was performed in alkaline phosphatase buffer containing nitroblue tetrazolium chloride/ 5-bromo-4-chloro-indolyl phosphate. Sections were then stained with 0.01% safranin, dehydrated in graded ethanol, and mounted with DPX mounting medium (Agar Scientific, Stansted, UK).
Fractionation of subcellular components was performed according to Nagahashi and Hiraike (1982). B37 endosperm (8 g), harvested 14 DAP, was ground in liquid nitrogen in a pestle and mortar, and suspended in 20 ml extraction buffer (0.5 m sucrose, 5 mm EDTA, 5 mm DTT, 30 mm Tris/MES pH 7.7). The suspension was filtered through one layer of Miracloth (Calbiochem, Novabiochem, Schwalbach, Germany), the retained fraction being treated as crude cell walls, and the filtrate was centrifuged at 1000 g for 5 min to yield pellet 1 (P1) and supernatant 1 (S1). S1 was pelleted at 6000 g for 20 min to give pellet 2 (P2) and supernatant 2 (S2). S2 was pelleted at 80 000 g for 2 h giving rise to pellet 3 (P3) and supernatant 3 (S3). The P3 pellet was resuspended in 1 ml pellet buffer (0.25 m sucrose, 1 mm DTT, 3 mm Tris/MES pH 7.2).
In vitro antifungal activity assay
Fungal strains used in this study are Alternaria brassicicola MUCL 20297, Aspergillus flavus var. flavus CBS 111.45, Botrytis cinerea MUCL 30158, Fusarium moniliforme CBS 218.76, Fusarium culmorum MUCL 30162, Neurospora crassa FGSC 2489, Plectosphaerella cucumerina (provided by Dr B. Mauch-Mani, Université de Fribourg, Switzerland), and Verticillium dahliae MUCL 19210. Filamentous fungi were grown on six-cereal agar, and conidia were harvested as described previously (Broekaert et al., 1990). Conidia spore stocks in 20% (v/v) glycerol were at a final concentration of 2 × 107 conidia ml−1.
Antifungal activity assay.
Antifungal activity of BAP proteins against fungi was assayed by microspectrophotometry of liquid cultures grown in microtitre plates as described previously (Broekaert et al., 1990; Terras et al., 1992). Briefly, in a well of a 96-well microplate, 10 µl of the protein sample was mixed with 90 µl of either half-strength potato dextrose broth (0.5 PDB; Difco, Detroit, MI, USA) or 0.5 PDB supplemented with 1 mm CaCl2 and 50 mm KCl, containing fungal spores at a concentration of 2 × 104 conidia ml−1. Growth was recorded after 24 h incubation at 22°C. The absorbance at 595 nm served as a measure for microbial growth (Terras et al., 1992). IC50 values (the concentration of the antifungal protein required to inhibit 50% of the fungal growth) were calculated from dose–response curves with twofold dilution steps (Terras et al., 1992).
SYTOX Green uptake
Fungal membrane permeabilization was measured by SYTOX Green uptake as described previously (Thevissen et al., 1999). Fungi were grown at an inoculum density of 2 × 105 conidia ml−1 in 12 g PDB per litre (Difco) with continuous shaking (200 r.p.m.) at 22°C. After 16 h incubation, hyphae were washed with SMF1 (synthetic medium for fungi containing 50 µm MgSO4, 50 µm CaCl2, 5 µm FeSO4, 0.1 µm CoCl2, 0.1 µm CuSO4, 2 µm Na2MoO4, 0.5 µm H3BO3, 0.1 µm KI, 0.5 µm ZnSO4, 0.1 µm MnSO4, 10 g l−1 glucose, 1 g l−1 asparagine, 20 mg l−1 methionine, 2 mg l−1 myo-inositol, 0.2 mg l−1 biotin, 1 mg l−1 thiamine-hydrochloride, 0.2 mg l−1 pyridoxine-hydrochloride, 0.5 mm K2PO4). Aliquots of the fungal suspension (90 µl), supplemented with 0.2 µm SYTOX Green, were mixed with 10 µl of the same medium containing BAP proteins, and incubated in white 96-well microplates (PE white, Perkin Elmer, Norwalk, CT, USA). After incubation for 30 min at 22°C with periodic agitation, fluorescence emitted by the cells in the microplates was measured using a Perkin Elmer fluorescence spectrometer LS 50 B at an excitation wavelength of 488 nm (slit, 10 nm) and an emission wavelength of 540 nm (slit, 5 nm). Fluorescence values of the samples were corrected by subtracting the fluorescence value of a culture in the same medium in absence of the peptides but in the presence of SYTOX Green. Absolute values of fluorescence did not differ more than 50% in independent tests performed under identical conditions.
We thank W. Broekaert (KU Leuven) and E. Schmelzer (MPIZ Köln) for advice during the course of this project, and we acknowledge the technical assistance of Ursula Seul and Brigitte Piegeler. The project was supported by the Deutsche Forschungsgemeinschaft (SPP322-1005, SFB274), and the European Union (EU-FP4 project BIO4CT-962158).