SEARCH

SEARCH BY CITATION

References

  • 1
    Alberts, B. (1998) The cell as a collection of protein machines: preparing the next generation of molecular biologists. Cell 92, 291294.
  • 2
    Garrels, J.I. (1996) YPD-A database for the proteins of Saccharomyces cerevisiae. Nucleic Acids Res. 24, 4649.
  • 3
    Bader, G.D & Hogue, C.W. (2000) BIND – a data specification for storing and describing biomolecular interactions, molecular complexes and pathways. Bioinformatics 16, 465477.
  • 4
    Gavin, A.C., Bosche, M., Krause, R., Grandi, P., Marzioch, M., Bauer, A., Schultz, J., Rick, J.M., Michon, A.M., Cruciat, C.M., Remor, M., Hofert, C., Schelder, M., Brajenovic, M., Ruffner, H., Merino, A., Klein, K., Hudak, M., Dickson, D., Rudi, T., Gnau, V., Bauch, A., Bastuck, S., Huhse, B., Leutwein, C., Heurtier, M.A., Copley, R.R., Edelmann, A., Querfurth, E., Rybin, V., Drewes, G., Raida, M., Bouwmeester, T., Bork, P., Seraphin, B., Kuster, B., Neubauer, G. & Superti-Furga, G. (2002) Functional organization of the yeast proteome by systematic analysis of protein complexes. Nature 415, 141147.
  • 5
    Ho, Y., Gruhler, A., Heilbut, A., Bader, G.D., Moore, L., Adams, S.L., Millar, A., Taylor, P., Bennett, K., Boutilier, K., Yang, L., Wolting, C., Donaldson, I., Schandorff, S., Shewnarane, J., Vo, M., Taggart, J., Goudreault, M., Muskat, B., Alfarano, C., Dewar, D., Lin, Z., Michalickova, K., Willems, A.R., Sassi, H., Nielsen, P.A., Rasmussen, K.J., Andersen, J.R., Johansen, L.E., Hansen, L.H., Jespersen, H., Podtelejnikov, A., Nielsen, E., Crawford, J., Poulsen, V., Sorensen, B.D., Matthiesen, J., Hendrickson, R.C., Gleeson, F., Pawson, T., Moran, M.F., Durocher, D., Mann, M., Hogue, C.W., Figeys, D. & Tyers, M. (2002) Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry. Nature 415, 180183.
  • 6
    Ozawa, M., Baribault, H. & Kemler, R. (1989) The cytoplasmic domain of the cell adhesion molecule uvomorulin associates with three independent proteins structurally related in different species. EMBO J. 8, 17111717.
  • 7
    Aberle, H., Butz, S., Stappert, J., Weissig, H., Kemler, R. & Hoschuetzky, H. (1994) Assembly of the cadherin-catenin complex in vitro with recombinant proteins. J. Cell Sci. 107, 36553663.
  • 8
    Rimm, D.L., Koslov, E.R., Kebriaei, P., Cianci, C.D. & Morrow, J.S. (1995) Alpha 1 (E) -catenin is an actin-binding and -bundling protein mediating the attachment of F-actin to the membrane adhesion complex. Proc. Natl Acad. Sci. USA 92, 88138817.
  • 9
    Molenaar, M., van de Wetering, M., Oosterwegel, M., Peterson-Maduro, J., Godsave, S., Korinek, V., Roose, J., Destree, O. & Clevers, H. (1996) XTcf-3 transcription factor mediates beta-catenin-induced axis formation in Xenopus embryos. Cell 86, 391399.
  • 10
    Behrens, J., von Kries, J.P., Kuhl, M., Bruhn, L., Wedlich, D., Grosschedl, R & Birchmeier, W. (1996) Functional interaction of beta-catenin with the transcription factor LEF-1. Nature 382, 638642.
  • 11
    Huber, O., Korn, R., McLaughlin, J., Ohsugi, M., Herrmann, B.G & Kemler, R. (1996) Nuclear localization of beta–catenin by interaction with transcription factor LEF-1. Mech. Dev. 59, 310.
  • 12
    Ajuh, P., Kuster, B., Panov, K., Zomerdijk, J.C., Mann, M & Lamond, A.I. (2000) Functional analysis of the human CDC5L complex and identification of its components by mass spectrometry. EMBO J. 19, 65696581.
  • 13
    Wang, Y., Cortez, D., Yazdi, P., Neff, N., Elledge, S.J & Qin, J. (2000) BASC, a super complex of BRCA1-associated proteins involved in the recognition and repair of aberrant DNA structures. Genes Dev. 14, 927939.
  • 14
    Schmitt-Ulms, G., Legname, G., Baldwin, M.A., Ball, H.L., Bradon, N., Bosque, P.J., Crossin, K.L., Edelman, G.M., DeArmond, S.J., Cohen, F.E & Prusiner, S.B. (2001) Binding of neural cell adhesion molecules (N-CAMs) to the cellular prion protein. J. Mol. Biol. 314, 12091225.
  • 15
    Jackson, V. (1999) Formaldehyde cross-linking for studying nucleosomal dynamics. Methods 17, 125139.
  • 16
    Fancy, D.A. (2000) Elucidation of protein–protein interactions using chemical cross- linking or label transfer techniques. Curr. Opin. Chem. Biol. 4, 2833.
  • 17
    Medina, D., Moskowitz, N., Khan, S., Christopher, S & Germino, J. (2000) Rapid purification of protein complexes from mammalian cells. Nucleic Acids Res. 28, E61.
  • 18
    Zachariae, W., Shevchenko, A., Andrews, P.D., Ciosk, R., Galova, M., Stark, M.J., Mann, M & Nasmyth, K. (1998) Mass spectrometric analysis of the anaphase-promoting complex from yeast: identification of a subunit related to cullins. Science 279, 12161219.
  • 19
    Ikura, T., Ogryzko, V.V., Grigoriev, M., Groisman, R., Wang, J., Horikoshi, M., Scully, R., Qin, J & Nakatani, Y. (2000) Involvement of the TIP60 histone acetylase complex in DNA repair and apoptosis. Cell 102, 463473.
  • 20
    Becamel, C., Alonso, G., Galeotti, N., Demey, E., Jouin, P., Ullmer, C., Dumuis, A., Bockaert, J & Marin, P. (2002) Synaptic multiprotein complexes associated with 5-HT (2C) receptors: a proteomic approach. EMBO J. 21, 23322342.
  • 21
    Rappsilber, J., Ajuh, P., Lamond, A.I & Mann, M. (2001) SPF30 is an essential human splicing factor required for assembly of the U4/U5/U6 tri-small nuclear ribonucleoprotein into the spliceosome. J. Biol. Chem. 276, 3114231150.
  • 22
    Neubauer, G., King, A., Rappsilber, J., Calvio, C., Watson, M., Ajuh, P., Sleeman, J., Lamond, A & Mann, M. (1998) Mass spectrometry and EST-database searching allows characterization of the multi-protein spliceosome complex. Nat. Genet. 20, 4650.
  • 23
    Husi, H., Ward, M.A., Choudhary, J.S., Blackstock, W.P & Grant, S.G. (2000) Proteomic analysis of NMDA receptor-adhesion protein signaling complexes. Nat Neurosci. 3, 661669.
  • 24
    Rigaut, G., Shevchenko, A., Rutz, B., Wilm, M., Mann, M & Seraphin, B. (1999) A generic protein purification method for protein complex characterization and proteome exploration. Nat. Biotechnol. 17, 10301032.
  • 25
    Westermarck, J., Weiss, C., Saffrich, R., Kast, J., Musti, A.M., Wessely, M., Ansorge, W., Seraphin, B., Wilm, M., Valdez, B.C & Bohmann, D. (2002) The DEXD/H-box RNA helicase RHII/Gu is a co-factor for c-Jun-activated transcription. EMBO J. 21, 451460.
  • 26
    Link, A.J., Eng, J., Schieltz, D.M., Carmack, E., Mize, G.J., Morris, D.R., Garvik, B.M., Yates, J.R & 3rd. (1999) Direct analysis of protein complexes using mass spectrometry. Nat. Biotechnol. 17, 676682.
  • 27
    Washburn, M.P., Wolters, D. & Yates, J.R. 3rd. (2001) Large-scale analysis of the yeast proteome by multidimensional protein identification technology. Nat Biotechnol. 19, 242247.
  • 28
    Henzel, W.J., Billeci, T.M., Stults, J.T., Wong, S.C., Grimley, C & Watanabe, C. (1993) Identifying proteins from two-dimensional gels by molecular mass searching of peptide fragments in protein sequence databases. Proc. Natl Acad. Sci. USA 90, 50115015.
  • 29
    Mann, M & Wilm, M. (1994) Error-tolerant identification of peptides in sequence databases by peptide sequence tags. Anal Chem. 66, 43904399.
  • 30
    Eng, J., McCorrmack, A & Yates, J. (1994) An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database. J. Am. Soc. Mass. Spectrom. 5, 976989.
  • 31
    Perkins, D.N., Pappin, D.J., Creasy, D.M & Cottrell, J.S. (1999) Probability-based protein identification by searching sequence databases using mass spectrometry data. Electrophoresis 20, 35513567.
  • 32
    Kuster, B., Mortensen, P., Andersen, J.S & Mann, M. (2001) Mass spectrometry allows direct identification of proteins in large genomes. Proteomics 1, 641650.
  • 33
    Wilm, M., Shevchenko, A., Houthaeve, T., Breit, S., Schweigerer, L., Fotsis, T & Mann, M. (1996) Femtomole sequencing of proteins from polyacrylamide gels by nano- electrospray mass spectrometry. Nature 379, 466469.
  • 34
    McCormack, A.L., Schieltz, D.M., Goode, B., Yang, S., Barnes, G., Drubin, D & Yates, J.R.R. (1997) Direct analysis and identification of proteins in mixtures by LC/MS/MS and database searching at the low-femtomole level. Anal Chem. 69, 767776.
  • 35
    Ideker, T., Galitski, T & Hood, L. (2001) A new approach to decoding life: systems biology. Annu. Rev. Genomics Hum. Genet. 2, 343372.