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References

  • 1
    Soyfer, V.N. & Potoman, V.N. (1996) Triple-Helical Nucleic Acids. Springer-Verlag, New York.
  • 2
    Thuong, N.T. & Hélène, C. (1993) Sequence specific recognition and modification of double helical DNA by oligonucleotides. Angew. Chem. Int. Ed. Engl. 32, 666690.
  • 3
    Fox, K.R. (2000) Targeting DNA with triplexes. Curr. Med. Chem. 7, 1737.
  • 4
    Neidle, S. (1997) Recent developments in triple helix regulation of gene expression. Anti-Cancer Drug Des. 12, 433442.
  • 5
    Vasquez, K.M. & Wilson, J.H. (1998) Triplex-directed modification of genes and gene activity. Trends Biochem. Sci. 23, 49.
  • 6
    Chan, P.P. & Glazer, P.M. (1997) Triplex DNA: fundamental advances and potential applications for gene therapy. J. Mol. Med. 75, 267282.
  • 7
    Lacroix, L., Arimondo, P.B., Takasugi, M., Hélène, C. & Mergny, J.L. (2000) Pyrimidine morpholino oligonucleotides form a stable triple helix in the absence of magnesium ions. Biochem. Biophys. Res. Commun. 270, 363369.
  • 8
    Zhou-Sun, B.W., Sun, J.S., Gryaznov, S.M., Liquier, J., Garestier, T., Hélène, C. & Taillandier, E. (1997) A physico-chemical study of triple helix formation by an oligodeoxythymidylate with N3′[RIGHTWARDS ARROW]P5′ phosphoramidate linkages. Nucleic Acids Res. 25, 17821787.
  • 9
    Cuenoud, B., Casset, F., Hüsken, D., Natt, F., Wolf, R.M., Altmann, K.H., Martin, P. & Moser, H.E. (1998) Dual recognition of double-stranded DNA by 2′-aminoethoxy-modified oligonucleotides. Angew. Chem. Int. Ed. Engl. 37, 12881291.
  • 10
    Bijapur, J., Keppler, M.D., Bergqvist, S., Brown, T. & Fox, K.R. (1999) 5-(1-propargylamino)-2′-deoxyuridine (UP): a novel thymidine analogue for generating DNA triplexes with increased stability. Nucleic Acids Res. 27, 18021809.
  • 11
    Sun, J.-S., François, J.-C., Montenay-Garestier, T., Saison-Behmoaras, T., Roig, V., Thuong, N.T. & Hélène, C. (1989) Sequence-specific intercalating agents: Intercalation at specific sequences on duplex DNA via major groove recognition by oligonucleotide-intercalator conjugates. Proc. Natl Acad. Sci. USA 86, 91989202.
  • 12
    Stonehouse, T.J. & Fox, K.R. (1994) DNase I footprinting of triple helix formation at polypurine tracts by acridine-linked oligopyrimidines: Stringency, structural changes and interaction with minor groove binding ligands. Biochim. Biophys. Acta 1218, 322330.
  • 13
    Takasugi, M., Guendouz, A., Chassignol, M., Decout, J.L., Lhomme, J., Thuong, N.T. & Hélène, C. (1991) Sequence-specific photo-induced cross-linking of the two strands of double-helical DNA by a psoralen covalently linked to a triple helix-forming oligonucleotide. Proc. Natl Acad. Sci. USA 88, 56025605.
  • 14
    Darby, R.A.J. & Fox, K.R. (2002) Triple-helix-specific ligands. In: Interaction of Small Molecules with DNA and RNA: from Synthesis to Nucleic Acid Complexes (eds Demeunynck, M., Bailly, C., Wilson, W.D.) pp. 360383, Wiley VCH, NJ.
  • 15
    Mergny, J.L., Duval-Valentin, G., Nguyen, C.H., Perrouault, L., Faucon, B., Rougée, M., Montenay-Garestier, T., Bisagni, E. & Hélène, C. (1992) Triple-helix specific ligands. Science 256, 16811684.
  • 16
    Marchand, C., Bailly, C., Nguyen, C.H., Bisagni, E., Garestier, T., Hélène, C. & Waring, M.J. (1996) Stabilization of triple helical DNA by a benzopyridoquinoxaline intercalator. Biochemistry 35, 50225032.
  • 17
    Schmitt, P., Nguyen, C.H., Sun, J.S., Grierson, D.S., Bisagni, E., Garestier, T. & Hélène, C. (2000) 13H-benzo[6–7]indolo[3,2-c]quinolines (B[6,7]IQ): optimization of their DNA triplex-specific stabilization properties. Chem. Commun. 763764.
  • 18
    Silver, G.C., Sun, J.S., Nguyen, C.H., Boutorine, A.S., Bisagni, E. & Hélène, C. (1997) Stable triple-helical DNA complexes formed by benzopyridoindole- and benzopyridoquinoxaline-oligonucleotide conjugates. J. Am. Chem. Soc. 119, 263268.
  • 19
    Lee, J.S., Latimer, L.J.P. & Hampel, K.J. (1993) Coralyne binds tightly to both TAT- and CGC+-containing DNA triplexes. Biochemistry 32, 55915597.
  • 20
    Latimer, L.J.P., Payton, N., Forsyth, G. & Lee, J.S. (1995) The binding of analogues of coralyne and related heterocyclics to DNA triplexes. Biochem. Cell Biol. 73, 1118.
  • 21
    Moraru-Allen, A.A., Cassidy, S., Alvarez, J.L.A., Fox, K.R., Brown, T. & Lane, A.N. (1997) Coralyne has a preference for intercalation between TA.T triples in intramolecular DNA triple helices. Nucleic Acids Res. 25, 18901896.
  • 22
    Wilson, W.D., Tanious, F.A., Mizan, S., Yao, S., Kiselyov, A.S., Zon, G. & Strekowski, L. (1993) DNA triple-helix specific intercalators as antigene enhancers. Biochemistry 32, 1061410621.
  • 23
    Chandler, S.P., Strekowski, L., Wilson, W.D. & Fox, K.R. (1995) Footprinting studies on ligands which stabilise DNA triplexes. Biochemistry 34, 72347242.
  • 24
    Cassidy, S.A., Strekowski, L., Wilson, W.D. & Fox, K.R. (1994) Effect of a triplex-binding ligand on parallel and antiparallel DNA triple helices using short unmodified and acridine-linked oligonucleotides. Biochemistry 33, 1533815347.
  • 25
    Cassidy, S.A., Strekowski, L. & Fox, K.R. (1996) DNA sequence specificity of a naphthylquinoline triple helix-binding ligand. Nucleic Acids Res. 24, 41334138.
  • 26
    Chaires, J.B., Ren, J., Henary, M., Zegrocka, O., Bischop, G.R. & Strekowski, L. (2003) Triplex selective 2-(2-naphthyl) quinoline compounds: origins of affinity and new design principles. J. Am. Chem. Soc. 125, 72727283.
  • 27
    Fox, K.R., Polucci, P., Jenkins, T.C. & Neidle, S. (1995) A molecular anchor for stabilizing triple-helical DNA. Proc. Natl Acad. Sci. USA 92, 78877891.
  • 28
    Keppler, M.D., Read, M.A., Perry, P.J., Trent, J.O., Jenkins, T.C., Reszka, A.P., Neidle, S. & Fox, K.R. (1999) Stabilization of DNA triple helices by a series of mono- and disubstituted amidoanthraquinones. Eur. J. Biochem. 263, 817825.
  • 29
    Escudé, C., Sun, J.-S., Nguyen, C.H., Bisagni, E., Garestier, T. & Hélène, C. (1996) Ligand-induced formation of triple helices with antiparallel third strands containing G and T. Biochemistry 35, 57355740.
  • 30
    Volker, J. & Klump, H.H. (1994) Electrostatic effects in DNA triple helices. Biochemistry 33, 1350213508.
  • 31
    Asensio, J.L., Lane, A.N., Dhesi, J., Bergvist, S. & Brown, T. (1998) The contribution of cytosine protonation to the stability of parallel DNA triple helices. J. Mol. Biol. 275, 811822.
  • 32
    Keppler, M.D. & Fox, K.R. (1997) Relative stability of triplexes containing different numbers of T.AT and C+.GC triplets. Nucleic Acids Res. 25, 46444649.
  • 33
    Lee, J.S., Woodsworth, M.L., Latimer, L.J.P. & Morgan, A.R. (1984) Poly (pyrimidine) poly (purine) synthetic DNAs containing 5-methylcytosine form stable triplexes at neutral pH. Nucleic Acids Res. 12, 66036614.
  • 34
    Darby, R.A.J., Sollogoub, M., McKeen, C., Brown, L., Risitano, A., Brown, N., Barton, C., Brown, T. & Fox, K.R. (2002) High throughput measurement of duplex, triplex and quadruplex melting curves using molecular beacons and the LightCycler. Nucleic Acids Res. 29, e39.
  • 35
    Perry, P.J., Gowan, S.M., Reszka, A.P., Polucci, P., Jenkins, T.C., Kelland, L.R. & Neidle, S. (1998) 1,4- and 2,6-disubstituted amidoanthracene-9,10-dione derivatives as inhibitors of human telomerase. J. Med. Chem. 41, 32533260.
  • 36
    Perry, P.J., Reszka, A.P., Wood, A.A., Read, M.A., Gowan, S.M., Dosanjh, H.S., Trent, J.O., Jenkins, T.C., Kelland, L.R. & Neidle, S. (1998) Human telomerase inhibition by regioisomeric disubstituted amidoanthacene-9,10-diones. J. Med. Chem. 41, 48734874.
  • 37
    Dabrowiak, J.C. & Goodisman, J. (1989) Quantitative footprinting analysis of drug–DNA interactions. In: Chemistry and Physics of DNA–Ligand Interactions (Kallenbach, N.R., ed.), pp. 143174. Academic Press, New York.
  • 38
    James, P.L., Brown, T. & Fox, K.R. (2003) Thermodynamic and kinetic stability of intermolecular triple helices containing different proportions of C+?GC and T?AT triplets. Nucleic Acids Res. 31, 55985606.
  • 39
    Risitano, A. & Fox, K.R. (2003) Stability of intramolecular DNA quadruplexes: comparison with DNA duplexes. Biochemistry 42, 65076513.
  • 40
    Roberts, R.W. & Crothers, D.M. (1996) Prediction of the stability of DNA triplexes. Proc. Natl Acad. Sci. USA 93, 43204325.
  • 41
    Plum, G.E. & Breslauer, K.J. (1995) Thermodynamics of an intramolecular DNA triple helix: a calorimetric and spectroscopic study of the pH and salt dependence of thermally induced structural transitions. J. Mol. Biol. 248, 679695.
  • 42
    Wilson, W.D., Hopkins, H.P., Mizan, S., Hamilton, D.D. & Zon, G. (1994) Thermodynamics of DNA triplex formation in oligomers with and without cytosine base. J. Am. Chem. Soc. 116, 36073608.