The high-throughput protein-to-structure pipeline at SECSG
Acta Crystallographica Section D
Volume 61, Issue 6, pages 679–684, June 2005
How to Cite
Xu, H., Liu, Z.-J., Ng, J. D., Lin, D., Shah, A. K., Chen, L., Tempel, W., Habel, J. E., Horanyi, P. S., Yang, H., Kataeva, I. A., Chang, J. C., Huang, L., Zhou, W., Chang, S.-H., Lee, D., Praissman, J. L., Zhang, H., Newton, M. G., Rose, J. P., Richardson, J. S., Richardson, D. C. and Wang, B.-C. (2005), The high-throughput protein-to-structure pipeline at SECSG. Acta Crystallographica Section D, 61: 679–684. doi: 10.1107/S0907444905013132
- structural genomics;
- high throughput.
Using a high degree of automation, the crystallography core at the Southeast Collaboratory for Structural Genomics (SECSG) has developed a high-throughput protein-to-structure pipeline. Various robots and automation procedures have been adopted and integrated into a pipeline that is capable of screening 40 proteins for crystallization and solving four protein structures per week. This pipeline is composed of three major units: crystallization, structure determination/validation and crystallomics. Coupled with the protein-production cores at SECSG, the protein-to-structure pipeline provides a two-tiered approach for protein production at SECSG. In tier 1, all protein samples supplied by the protein-production cores pass through the pipeline using standard crystallization screening and optimization procedures. The protein targets that failed to yield diffraction-quality crystals (resolution better than 3.0 Å) become tier 2 or salvaging targets. The goal of tier 2 target salvaging, carried out by the crystallomics core, is to produce the target proteins with increased purity and homogeneity, which would render them more likely to yield well diffracting crystals. This is performed by alternative purification procedures and/or the introduction of chemical modifications to the proteins (such as tag removal, methylation, surface mutagenesis, selenomethionine labelling etc.). Details of the various procedures in the pipeline for protein crystallization, target salvaging, data collection/processing and high-throughput structure determination/validation, as well as some examples, are described.