SEARCH

SEARCH BY CITATION

References

  • Babbitt PC, Mrachko GT, Hasson MS, Huisman GW, Kolter R, Ringe D, Petsko GA, Kenyon GL, Gerlt JA. 1995. A functionally diverse enzyme superfamily that abstracts the alpha protons of carboxylic acids. Science 267: 11591161.
  • Bhattacharjee JK. 1992. Evolution of α-aminoadipate pathway for the synthesis of lysin in fungi. In: Mortlock ed. The evolution of metabolic function. London, UK: CRC Press. pp 4780.
  • Bolduc JM, Dyer DH, Scott WG, Singer P, Sweet RM, Koshland DE Jr, Stoddard BL. 1995. Mutagenesis and Laue structures of enzyme intermediates: Isocitrate dehydrogenase. Science 268: 13121318.
  • Chen R. 1999. A general strategy for enzyme engineering. Trends Biotechnol 17: 344345.
  • Chen R, Greer A, Dean AM. 1995. A highly active decarboxylating dehydrogenase with rationally inverted coenzyme specificity. Proc Natl Acad Sci USA 92: 1166611670.
  • Chen R, Greer A, Dean AM. 1996a. Redesigning secondary structure to invert coenzyme specificity in isopropylmalate dehydrogenase. Proc Natl Acad Sci USA 93: 1217112176.
  • Chen R, Greer AF, Dean AM. 1997a. Structural constraints in protein engineering–The coenzyme specificity of Escherichia coli isocitrate dehydrogenase. Eur J Biochem 250: 578582.
  • Chen R, Greer AF, Dean AM, Hurley JH. 1997b. Engineering secondary structure to invert coenzyme specificity in isopropylmalate dehydrogenase. San Diego, CA: Academic Press.
  • Chen R, Grobler JA, Hurley JH, Dean AM. 1996b. Second-site suppression of regulatory phosphorylation in Escherichia coli isocitrate dehydrogenase. Protein Sci 5: 287295.
  • Chen RD, Gadal P. 1990. Do the mitochondria provide the 2-oxoglutarate needed for glutamate synthesis in higher plant chloroplasts. Plant Physiol Biochem 28: 411427.
  • Cupp JR, McAlister-Henn L. 1993. Kinetic analysis of NAD(+)-isocitrate dehydrogenase with altered isocitrate binding sites: Contribution of IDH1 and IDH2 subunits to regulation and catalysis. Biochemistry 32: 93239328.
  • Dean AM, Dvorak L. 1995. The role of glutamate 87 in the kinetic mechanism of Thermus thermophilus isopropylmalate dehydrogenase. Protein Sci 4: 21562167.
  • Dean AM, Shiau AK, Koshland DE Jr. 1996. Determinants of performance in the isocitrate dehydrogenase of Escherichia coli. Protein Sci 5: 341347.
  • Deckert G, Warren PV, Gaasterland T, Young WG, Lenox AL, Graham DE, Overbeek R, Snead MA, Keller M, Aujay M, et al. 1998. The complete genome of the hyperthermophilic bacteriun Aquifex aeolicus. Nature 392: 353358.
  • Ellerstrom M, Josefsson LG, Rask L, Ronne H. 1992. Cloning of a cDNA for rape chloroplast 3-isopropylmalate dehydrogenase by genetic complementation in yeast. Plant Mol Biol Int J Mol Biol Biochem Genet Eng 18: 557566.
  • Henikoff S, Greene EA, Pietrokovski S, Bork P, Attwood TK, Hood L. 1997. Gene families: The taxonomy of protein paralogs and chimeras. Science 278: 609614.
  • Hofmann K. 1998. Protein classification & functional assignment. In: PattersonM, HandelM, eds. Trends guide to bioinformatics. Amsterdam, The Netherlands: Elsevier Science. pp 1821.
  • Hohlfeld M, Veit M, Strack D. 1996. Hydroxycinnamoyltransferases involved in the accumulation of caffeic acid esters in gametophytes and sporophytes of Equisetum arvense. Plant Physiol 111: 11531159.
  • Hurley JH, Chen R, Dean AM. 1996. Determinants of cofactor specificity in isocitrate dehydrogenase: Structure of an engineered NADP+ [RIGHTWARDS ARROW] NAD+ specificity-reversal mutant. Biochemistry 35: 56705678.
  • Hurley JH, Dean AM, Koshland DE Jr, Stroud RM. 1991. Catalytic mechanism of NADP(+)-dependent isocitrate dehydrogenase: Implications from the structures of magnesium-isocitrate and NADP+ complexes. Biochemistry 30: 86718678.
  • Hurley JH, Thorsness PE, Ramalingam V, Helmers NH, Koshland DE Jr, Stroud RM. 1989. Structure of a bacterial enzyme regulated by phosphorylation, isocitrate dehydrogenase. Proc Natl Acad Sci USA 86: 86358639.
  • Imada K, Sato M, Tanaka N, Katsube Y, Matsuura Y, Oshima T. 1991. Three-dimensional structure of a highly thermostable enzyme, 3-isopropylmalate dehydrogenase of Thermus thermophilus at 2.2 A resolution. J Mol Biol 222: 725738.
  • Jackson SD, Sonnewald U, Willmitzer L. 1993. Cloning and expression analysis of beta-isopropylmalate dehydrogenase from potato. Mol Gen Genet 238: 309314.
  • Jensen RA. 1976. Enzyme recruitment in evolution of new function. Annu Rev Microbiol 30: 409425.
  • Keys DA, McAlister-Henn L. 1990. Subunit structure, expression, and function of NAD(H)-specific isocitrate dehydrogenase in Saccharomyces cerevisiae. J Bacteriol 172: 42804287.
  • Lancien M, Gadal P, Hodges M. 1998. Molecular characterization of higher plant NAD-dependent isocitrate dehydrogenase: Evidence for a heteromeric structure by the complementation of yeast mutants. Plant J 16: 325333.
  • Nichols BJ, Perry AC, Hall L, Denton RM. 1995. Molecular cloning and deduced amino acid sequences of the alpha- and beta-subunits of mammalian NAD(+)-isocitrate dehydrogenase. Biochem J 310: 917922.
  • Ramachandran N, Colman RF. 1983. Chemical characterization of distinct subunits of pig heart DPN-specific isocitrate dehydrogenase. J Biol Chem 255: 88598864.
  • Rossmann MG, Moras D, Olsen KW. 1974. Chemical and biological evolution of nucleotide-binding protein. Nature 250: 194199.
  • Rutter GA, Denton RM. 1989. The binding of Ca2+ ions to pig heart NAD+-isocitrate dehydrogenase and the 2-oxoglutarate dehydrogenase complex. Biochem J 263: 453462.
  • Serfozo P, Tipton PA. 1995. Substrate determinants of the course of tartrate dehydrogenase-catalyzed reactions. Biochemistry 34: 75177524.
  • Stoddard BL, Dean A, Koshland DE Jr. 1993. Structure of isocitrate dehydrogenase with isocitrate, nicotinamide adenine dinucleotide phosphate, and calcium at 2.5-A resolution: A pseudo-Michaelis ternary complex. Biochemistry 32: 93109316.
  • Tatusov RL, Koonin EV, Lipman DJ. 1997. A genomic perspective on protein families. Science 278: 631617.
  • Thornton JM. 1998. The future of bioinformatics. In: PattersonM, HandelM, eds. Trends guide to bioinformatics. Amsterdam, The Netherlands: Elsevier Science. pp 3031.
  • Tipton PA, Beecher BS. 1994. Tartrate dehydrogenase, a new member of the family of metal-dependent decarboxylating R-hydroxyacid dehydrogenases. Arch Biochem Biophys 313: 1521.
  • Wilks HM, Hart KW, Feeney R, Dunn CR, Muirhead H, Chia WN, Barstow DA, Atkinson T, Clarke AR, Holbrook JJ. 1988. A specific, highly active malate dehydrogenase by redesign of a lactate dehydrogenase framework. Science 242: 15411544.
  • Yaoi T, Miyazaki K, Oshima T. 1997. Substrate recognition of isocitrate dehydrogenase and 3-isopropylmalate dehydrogenase from Thermus thermophilus HB8. J Biochem (Tokyo) 121: 7781.