Comparative community gene expression analysis of Aquificales-dominated geothermal springs
Article first published online: 1 JAN 2013
© 2012 Society for Applied Microbiology and Blackwell Publishing Ltd
Volume 15, Issue 4, pages 1226–1237, April 2013
How to Cite
Hamamura, N., Meneghin, J. and Reysenbach, A.-L. (2013), Comparative community gene expression analysis of Aquificales-dominated geothermal springs. Environmental Microbiology, 15: 1226–1237. doi: 10.1111/1462-2920.12061
- Issue published online: 4 APR 2013
- Article first published online: 1 JAN 2013
- Accepted manuscript online: 6 DEC 2012 05:30AM EST
- Manuscript Accepted: 25 NOV 2012
- Manuscript Revised: 1 NOV 2012
- Manuscript Received: 17 JAN 2012
- NSF Geobiology and Low-Temperature Geochemistry programme. Grant Number: EAR-0720354
- NASA. Grant Numbers: NNG06GA52G, NAG5-8807, NNG04GR46G
- Grant-in-Aid for Young Scientist. Grant Number: 21810021
- NEXT Program. Grant Number: GS023
- Global COE Program from Japan Society for the Promotion of Science
Fig. S1. Comparative blast analysis of YNP-CS transcripts against YNP-CS metagenome versus reference genomes.
A. Bit score comparisons of 382 transcripts blastx against YNP-CS metagenome and S. yellowstonense genome;
B. Bit score comparisons of 57 transcripts blastx against YNP-CS metagenome and other reference genomes.
Fig. S2. Rarefaction curve based on the COG numbers assigned to in situ transcripts (A) and randomly selected 200 transcripts (B).
Fig. S3. Photograph of biofilms observed at Calcite Springs (YNP-CS: A), Mammoth Springs (YNP-MHS: B) in Yellowstone National Park, and Furnas, Azores, Portugal (AZ: C).
Table S1. Most abundantly detected transcripts assigned to 23 reference genomes.
Table S2. List of functional genes expressed in YNP-CS, YNP-MHS and AZ.
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