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Fig. S1. Integration of protein domain and gene structure conservation using phylogenetic trees.

Fig. S2. Integrative Orthology Viewer.

Fig. S3. Exploring genome-wide collinearity and synteny.

Fig. S4. From pairwise to multispecies genome collinearity.

Fig. S5. Overview of gene duplicates per species.

Fig. S6. GO enrichment output for P. tricornutum dataset urea_adapted_all.

Table S1. Overview of tools in the pico-PLAZA platform.

Table S2. Transcript count summary results case study ‘Efficient exploration of gene function diversity in large-scale expression data sets’.

Table S3. GO enrichment summary results case study ‘Efficient exploration of gene function diversity in large-scale expression data sets’.

Table S4. Gene family results Ostreococcus case study ‘Application of pico-PLAZA for metagenomic screens’.

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