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File S1. Includes supporting experimental procedures, Figure S1 and Tables S1–S12.

File S2. KEGG core and auxiliary pathway designations for Prochlorococcus and Pelagibacter.

Dataset S1. Taxon-specific ortholog cluster IDs, annotations, read counts and relative percentages for cDNA and DNA samples.

Dataset S2.Prochlorococcus differentially expressed KEGG orthologs organized by pathway for HMWDOM treatment versus Control.

Dataset S3.Prochlorococcus differentially expressed KEGG orthologs organized by pathway for ProDOM treatment versus Control.

Dataset S4.Pelagibacter differentially expressed KEGG orthologs organized by pathway for HMWDOM treatment versus Control.

Dataset S5.Pelagibacter differentially expressed KEGG orthologs organized by pathway for ProDOM treatment versus Control.

Fig. S1. Physiochemical characteristics of the mixed surface layer at Station ALOHA in 2010 plotted from the Hawaii Ocean Time-series Data Organization & Graphical System (HOT-DOGS) website (http://hahana.soest.hawaii.edu/hot/hot-dogs/) A) Monthly mixed layer depth calculated using potential temperature. B) Mean and standard deviation of monthly Low-level Nitrogen within the mixed layer depth. C) Mean and standard deviation of monthly Low-level Phosphate within the mixed layer depth. D) Mean and standard deviation of monthly Dissolved Organic Carbon within the mixed layer depth.

Table S1. Differentially expressed Prochlorococcus Orthologs enriched in HMWDOM belonging to auxiliary KEGG level 3 pathways.

Table S2. Differentially expressed Prochlorococcus Orthologs enriched in ProDOM belonging to auxiliary KEGG level 3 pathways.

Table S3. Differentially expressed Pelagibacter transport Orthologs underrepresented in HMWDOM.

Table S4. Differentially expressed Pelagibacter transport Orthologs underrepresented in ProDOM.

Table S5. Differentially expressed Pelagibacter transport Orthologs enriched in HMWDOM.

Table S6. Differentially expressed Pelagibacter transport Orthologs enriched in ProDOM.

Table S7. Differentially expressed Pelagibacter Orthologs enriched in HMWDOM belonging to auxiliary KEGG level 3 pathways.

Table S8. Differentially expressed Pelagibacter Orthologs enriched in ProDOM belonging to auxiliary KEGG level 3 pathways.

Table S9. Differentially expressed OM60 Orthologs enriched in HMWDOM.

Table S10. Differentially expressed OM60 Orthologs enriched in ProDOM.

Table S11. Differentially expressed OM60 Orthologs underrepresented in HMWDOM.

Table S12. Differentially expressed OM60 Orthologs underrepresented in ProDOM.

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