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References

  • Braid MD, Daniels ML & Kitts CL (2003) Removal of PCR inhibitors from soil DNA by chemical flocculation. J Microbiol Methods 52: 389393.
  • Friedrich CG, Bardischewsky F, Rother D, Quentmeier A & Fischer J (2005) Prokaryotic sulfur oxidation. Curr Opin Microbiol 8: 253259.
  • Ghosh W & Dam B (2009) Biochemistry and molecular biology of lithotrophic sulfur oxidation by taxonomically and ecologically diverse bacteria and archaea. FEMS Microbiol Rev 33: 9991043.
  • Giri BJ, Bano N & Hollibaugh JT (2004) Distribution of RuBisCO genotypes along a redox gradient in Mono Lake, California. Appl Environ Microbiol 70: 34433448.
  • Gorlenko VM (2007) Anoxygenic phototrophic bacteria from soda lakes. Transactions of the Winogradsky Institute of Microbiology, V. XIV, pp. 159183. Nauka, Moscow (in Russian).
  • Gorlenko VM, Bryntseva IA, Panteleeva EE, Tourova TP, Kolganova TV, Makhneva ZK & Moskalenko AA (2004) Ectothiorhodosinus mongolicum gen. nov., sp. nov., a new purple bacterium from a soda lake in Mongolia. Microbiology (Moscow, English translation) 73: 6673.
  • Grant WD & Sorokin DY (2011) Distribution and diversity of soda lake alkaliphiles. Extremophiles Handbook, vol. 1 (Horikoshi K, Antranikian G, Bull AT, Robb FT & Stetter KO, eds), pp. 2754. Springer, Tokyo.
  • Hugler M, Gartner A & Imhoff JF (2010) Functional genes as markers for sulfur cycling and CO2 fixation in microbial communities of hydrothermal vents of the Logatchev field. FEMS Microbiol Ecol 73: 526537.
  • Humayoun SB, Bano N & Hollibaugh JT (2003) Depth distribution of microbial diversity in Mono Lake, a meromictic soda lake in California. Appl Environ Microbiol 69: 10301042.
  • Kovaleva OL, Tourova TP, Muyzer G, Kolganova TV & Sorokin DY (2011) Diversity of RuBisCO and ATP citrate lyase genes in soda lake sediments. FEMS Microbiol Ecol 75: 3747.
  • Krishnani KK, Gopikrishna G, Pillai SM & Gupta BP (2010) Abundance of sulphur-oxidizing bacteria in coastal aquaculture using soxB gene analyses. Aquac Res 41: 12901301.
  • Lenk S, Moraru C, Hahnke S et al. (2012) Roseobacter clade bacteria are abundant in coastal sediments and encode a novel combination of sulfur oxidation genes. ISME J 6: 21782187.
  • Luo J-F, Lin W-T & Guo Y (2011) Functional genes based analysis of sulfur-oxidizing bacteria community in sulfide removing bioreactor. Appl Microbiol Biotechnol 90: 769778.
  • Ma Y, Zhang W, Xue YP, Zhou P, Ventosa A & Grant WD (2004) Bacterial diversity of the Inner Mongolian Baer Soda Lake as revealed by 16S rRNA gene sequence analyses. Extremophiles 8: 4551.
  • Mesbah N, Abou-El-Ela S & Wiegel J (2007) Novel and unexpected prokaryotic diversity in water and sediments of the alkaline, hypersaline lakes of the Wadi an Natrun. Microb Ecol 54: 598617.
  • Meyer B, Imhoff JF & Kuever J (2007) Molecular analysis of the distribution and phylogeny of the soxB gene among sulfur-oxidizing bacteria – evolution of the Sox sulfur oxidation enzyme system. Environ Microbiol 9: 29572977.
  • Muyzer G, Sorokin DY, Mavromatis K et al. (2011) Complete genome sequence of Thioalkalivibrio sp. K90mix. Stand Genomic Sci 5: 341355.
  • Perreault NN, Greer CW, Andersen DT, Tille S, Lacrampe-Couloume G, Lollar BS & Whyte LG (2008) Heterotrophic and autotrophic microbial populations in cold perennial springs of the high arctic. Appl Environ Microbiol 74: 68986907.
  • Petri R, Podgorsek L & Imhoff JF (2001) Phylogeny and distribution of the soxB gene among thiosulfate-oxidizing bacteria. FEMS Microbiol Lett 197: 171178.
  • Rees HC, Grant WD, Jones BE & Heaphy S (2004) Diversity of Kenyan soda lake alkaliphiles assessed by molecular methods. Extremophiles 8: 6371.
  • Singleton DR, Furlong MA, Rathbun SL & Whitman WB (2001) Quantitative comparisons of 16S rRNA gene sequence libraries from environmental samples. Appl Environ Microbiol 67: 43744376.
  • Sorokin DY (2003) Oxidation of inorganic sulfur compounds by obligately organotrophic bacteria. Microbiology (Moscow, English Translation) 72:725739.
  • Sorokin DY (2008) Diversity of halophilic sulfur-oxidizing bacteria in hypersaline habitats. Microbial Sulfur Metabolism (Dahl C & Friedrich CG eds). Proceedings of the International Symposium on Microbial Sulfur Metabolism 29.06.2006–02.07.2006, pp. 225237. Springer-Berlin, Münster, Germany.
  • Sorokin DY, Tourova TP, Kuznetsov BB, Bryatseva IA & Gorlenko VM (2000) Roseinatronobacter thiooxidans gen. nov., sp.nov. – a new alkaliphilic aerobic bacteriochlorophyll a-containing bacterium from soda lake. Microbiology (Moscow, English Translation) 69:19.
  • Sorokin DY, Banciu H, Robertson LA & Kuenen JG (2006) Haloalkaliphilic sulfur-oxidizing bacteria. Prokaryotes. Vol. 2: Ecophysiology and Biochemistry (Dworkin M, Falkow S, Rosenberg E, Schleifer KH & Stackebrandt E eds), pp. 969984. Springer, New York.
  • Sorokin DY, Kuenen JG & Muyzer G (2011) The microbial sulfur cycle in soda lakes. Front Microbiol 2: 44.
  • Tamura K, Peterson D, Peterson N, Stecher G, Nei M & Kumar S (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28: 27312739.
  • Thompson JD, Higgins DG & Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucleic Acids Res 9: 32513270.
  • Tourova TP, Kovaleva OL, Sorokin DY & Muyzer G (2010) Ribulose-1,5-bisphosphate carboxylase/oxygenase genes as a functional marker for chemolithoautotrophic halophilic sulfur-oxidizing bacteria in hypersaline habitats. Microbiology 156: 20162025.
  • Tourova TP, Kovaleva OL, Bumazhkin BK, Patutina EO, Kuznetsov BB, Briantseva IA, Gorlenko VM & Sorokin DY (2011). Utility of Ribulose-1,5-Biphosphate Carboxylase as a molecular marker for evaluation of autotrophic microbial consortia biodiversity in the surface layers of the Kulundine steppe soda lakes. Microbiology (Moscow, English translation) 80: 803817.
  • Van de Peer Y & De Wachter R (1994) TREECON for Windows: a software package for the construction and drawing of evolutionary trees for the Microsoft Windows environment. Comput Appl Biosci 10: 569570.
  • Yoshizawa Y, Toyoda K, Arai H, Ishii M & Igarashi Y (2004) CO2- responsive expression and gene organization of three ribulose-1,5-bisphosphate carboxylase/oxygenase enzymes and carboxysomes in Hydrogenovibrio marinus strain MH-110. J Bacteriol 186: 56855691.