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References

  • Aboal M & Werner O (2011) Morphology, fine structure, life cycle and phylogenetic analysis of Phyllosiphon arisari, a siphonous parasitic green alga. Eur J Phycol 46: 181192.
  • Altschul SF, Gish W, Miller W, Meyers EW & Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215: 403410.
  • Barkman JJ (1969) Phytosociology and ecology of cryptogamic epiphytes. Van Gorcum and Company, Assen, the Netherlands.
  • Belcher JH (1969) Prasiococcus calcarius (Boye Petersen) Vischer in the South Sandwich Islands. Br Phycol J 4: 119120.
  • Bellinzoni AM, Caneva G & Ricci S (2003) Ecological trends in travertine colonisation by pioneer algae and plant communities. Int Biodeterior Biodegradation 51: 203210.
  • Boenigk J, Pfandl K, Stadler P & Chatzinotas A (2005) High diversity of the ‘Spumella-like’ flagellates: an investigation based on the SSU rRNA gene sequences of isolates from habitats located in six different geographic regions. Environ Microbiol 7: 685697.
  • Broady PA (1983) The Antarctic distribution and ecology of the terrestrial chlorophytan alga Prasiococcus calcarius (Boye Petersen) Vischer. Polar Biol 1: 211216.
  • Broady PA (1996) Diversity, distribution and dispersal of Antarctic terrestrial algae. Biodivers Conserv 5: 13071335.
  • Brock TD (1973) Lower pH limit for existence of blue-green algae: evolutionary and ecological implications. Science 179: 480483.
  • Büdel B, Weber B, Kühl M, Pfanz H, Sültemeyer D & Wessels D (2004) Reshaping of sandstone surfaces by cryptoendolithic cyanobacteria: bioalkalization causes chemical weathering in arid landscapes. Geobiology 2: 261268.
  • Büdel B, Darienko T, Deutschewitz K, Dojani S, Friedl T, Mohr KI, Salisch M, Reisser W & Weber B (2009) Southern African biological soil crusts are ubiquitous and highly diverse in drylands, being restricted by rainfall frequency. Microb Ecol 57: 229247.
  • Cary SC, McDonald IR, Barrett JE & Cowan DA (2010) On the rocks: the microbiology of Antarctic Dry Valley soils. Nat Rev Microbiol 8: 129138.
  • Crispim CA & Gaylarde CC (2005) Cyanobacteria and biodeterioration of cultural heritage: a review. Microb Ecol 49: 19.
  • Crispim CA, Gaylarde PM & Gaylarde CC (2003) Algal and cyanobacterial biofilms on calcareous historic buildings. Curr Microbiol 46: 7982.
  • Cuzman OA, Ventura S, Sili C, Mascalchi C, Turchetti T, D'Acqui LP & Tiano P (2010) Biodiversity of phototrophic biofilms dwelling on monumental fountains. Microb Ecol 60: 8195.
  • Darienko T & Hoffmann L (2003) Algal growth on cultural monuments in Ukraine. Biologia Bratislava 58: 575587.
  • Ettl H & Gärtner G (1995) Syllabus der Boden-, Luft- und Flechtenalgen. Gustav Fischer, Stuttgart.
  • Freystein K, Salisch M & Reisser W (2008) Algal biofilms on tree bark to monitor airborne pollutants. Biologia 63: 866872.
  • Fučíková K & Lewis LA (2012) Intersection of Chlorella, Muriella and Bracteacoccus: resurrecting the genus Chromochloris Kol et Chodat (Chlorophyceae, Chlorophyta). Fottea 12: 8393.
  • Furey PC, Lowe RL & Johansen JR (2007) Wet wall algal community response to in-field nutrient manipulation in the Great Smoky Mountains National Park, USA. Algol Stud 125: 1743.
  • Garcia-Pichel F, Lopéz-Cortés A & Nübel U (2001) Phylogenetic and morphological diversity of cyanobacteria in soil desert crusts from the Colorado plateau. Appl Environ Microbiol 67: 19021910.
  • Gaylarde CC, Rodríguez CH, Navarro-Noya YE & Ortega-Morales BO (2012) Microbial biofilms on the sandstone monuments of the Angkor Wat complex, Cambodia. Curr Microbiol 64: 8592.
  • Gorbushina AA (2007) Life on the rocks. Environ Microbiol 9: 16131631.
  • Gustavs L (2010) Biodiversity and ecophysiology of aeroterrestrial green algae (Trebouxiophyceae, Chlorophyta). PhD Thesis, Faculty of Mathematics and Natural Sciences, Rostock.
  • Gustavs L, Görs M & Karsten U (2011) Polyol patterns in biofilm-forming aeroterrestrial green algae (Trebouxiophyceae, Chlorophyta). J Phycol 47: 533537.
  • Hallmann C, Rüdrich J, Enseleit M, Friedl T & Hoppert M (2011a) Microbial diversity on a marble monument: a case study. Environ Earth Sci 63: 17011711.
  • Hallmann C, Fritzlar D, Stannek L & Hoppert M (2011b) Ascomycete fungi on dimension stone of the “Burg Gleichen”, Thuringia. Environ Earth Sci 63: 17131722.
  • Hamby RK, Sims L, Issel L & Zimmer E (1988) Direct ribosomal RNA sequencing: optimization of extraction and sequencing methods for work with higher plants. Pl Mol Biol Rep 6: 175192.
  • Hammer Ø, Harper DAT & Ryan PD (2001) PAST: Paleontological Statistics software package for education and data analysis. Palaeontol Electronica 4: 9 pp.
  • Häubner N, Schumann R & Karsten U (2006) Aeroterrestrial microalgae growing in biofilms on facades-response to temperature and water stress. Microb Ecol 51: 285293.
  • Hepperle D (2004) SeqAssem©. A sequence analysis tool, counting assembler and trace data visualization tool for molecular sequences. Win32-Version. Distributed by the author via: http://www.seqeuntix.de.
  • Hindák F (1982) Taxonomic position of the chlorococcal alga Chlorella zofingiensis Dönz 1934 (Chlorophyceae). Arch Hydrobiol Suppl Algol Stud 30: 1323.
  • Hodač L, Hallmann C, Rosenkranz H, Fasshauer F & Friedl T (2012) Molecular evidence for the wide distribution of two lineages of terrestrial green algae (Chlorophyta) over tropics to temperate zone. ISRN Ecol 2012: 795924.
  • Holzinger A, Lütz C & Karsten U (2011) Desiccation stress causes structural and ultrastructural alterations in the aeroterrestrial green alga Klebsormidium crenulatum (Klebsormidiophyceae, Streptophyta) isolated from alpine soil crust. J Phycol 47: 591602.
  • Hoppert M, Reimer R, Kemmling A, Schröder A, Günzl B & Heinken T (2004) Structure and reactivity of a biological crust from a xeric sandy soil in Central Europe. Geomicrobiol J 21: 183191.
  • Hoppert M, Hallmann C, Stannek L, Fritzlar D & Enseleit M (2010) Makro- und Mikroflora in Fuge und Gestein. Die Drei Gleichen – Baudenkmäler und Naturraum (Siegesmund S & Hoppert M, eds), pp. 254263. Edition Leipzig, Leipzig.
  • Horath T & Bachofen R (2009) Molecular characterization of an endolithic microbial community in dolomite rock in the central Alps (Switzerland). Microb Ecol 58: 290306.
  • Huber T, Faulkner G & Hugenholtz P (2004) Bellerophon; a program to detect chimeric sequences in multiple sequence alignments. Bioinformatics 20: 23172319.
  • Huelsenbeck JP & Ronquist F (2001) MrBayes: Bayesian inference of phylogenetic trees. Bioinformatics 17: 754755.
  • Jeraldo P, Chia N & Goldenfeld N (2011) On the suitability of short reads of 16S rRNA for phylogeny-based analyses in environmental surveys. Environ Microbiol 13: 30003009.
  • Johnston CG & Vestal JR (1991) Photosynthetic carbon incorporation and turnover in the Antarctic cryptoendolithic microbial communities: are they the slowest-growing communities on earth? Appl Environ Microbiol 57: 23082311.
  • Karsten U & Holzinger A (2012) Light, temperature and desiccation effects on photosynthetic activity, and drought-induced ultrastructural changes in the green alga Klebsormidium dissectum (Streptophyta) from a high alpine soil crust. Microb Ecol 63: 5163.
  • Karsten U, Eixler S, Görs S & Schumann R (2003) Klimawandel und der mögliche Einfluss auf das Algenwachstum. Altbauinstandsetzung 5: 5158.
  • Karsten U, Schumann R, Häubner N & Friedl T (2005) Lebensraum Fassade: Aeroterrestrische Mikroalgen. Biol unserer Zeit 35: 2030.
  • Karsten U, Schumann T & Mostaert AS (2007a) Aeroterrestrial algae growing on man-made surfaces: what are their secrets of ecological success? Algae and Cyanobacteria in Extreme Environments (Seckbach J, ed), pp. 583597. Springer Verlag, Dordrecht, the Netherlands.
  • Karsten U, Lembcke S & Schumann R (2007b) The effects of ultraviolet radiation on photosynthetic performance, growth and sunscreen compounds in aeroterrestrial biofilm algae isolated from building facades. Planta 225: 9911000.
  • Katoh K & Toh H (2008) Recent developments in the MAFFT multiple sequence alignment program. Brief Bioinform 9: 286298.
  • Khaybullina LS, Gaysina LA, Johansen JR & Krautová M (2010) Examination of terrestrial algae of the Great Smoky Mountains National Park, USA. Fottea 10: 201215.
  • Ki JS (2012) Hypervariable regions (V1–V9) of the dinoflagellate 18S rRNA using a large dataset for marker considerations. J Appl Phycol 24: 10351043.
  • Krammer K & Lange-Bertalot H (1986–2004) Bacillariophyceae, Teil 1-5. Süßwasserflora Mitteleuropa Band 2/1-2/5 (Ettl H, Gerloff J, Heynung H & Mollenhauer D, eds), Gustav Fischer Verlag, Stuttgart, New York.
  • Krienitz L, Bock C, Dadheech PK & Pröschold T (2011) Taxonomic reassessment of the genus Mychonastes (Chlorophyceae, Chlorophyta) including the description of eight new species. Phycologia 50: 89106.
  • Lakatos M, Lange-Bertalot H & Büdel B (2004) Diatoms living inside the thallus of the green algal lichen Coenogonium linkii in neotropical lowland rain forests. J Phycol 40: 7073.
  • Lee JC & Gutell RR (2012) A Comparison of the crystal structure of eukaryotic and bacterial SSU ribosomal RNAs reveals common structural features in the hypervariable regions. PLoS ONE 7: e38203.
  • Lennon JT & Jones SE (2011) Microbial seed banks: the ecological and evolutionary implications of dormancy. Nat Rev Microbiol 9: 119130.
  • Lewis LA & McCourt RM (2004) Green algae and the origin of land plants. Am J Bot 91: 15351556.
  • Ludwig W, Strunk O, Westram R et al. (2004) ARB: a software environment for sequence data. Nucl Acids Res 32: 13631371.
  • Lukešová A & Hoffmann L (1995) Soil algae from acid rain impacted forest areas of Krušné hory mountains (Czech Republic). 2. Effects of pH on growth. Algol Stud 78: 3951.
  • Macedo MF, Miller AZ, Dionísio A & Saiz-Jimenez C (2009) Biodiversity of cyanobacteria and green algae on monuments in the Mediterranean Basin: an overview. Microbiology 155: 34763490.
  • Marande W, López-García P & Moreira D (2009) Eukaryotic diversity and phylogeny using small- and large-subunit ribosomal RNA genes from environmental samples. Environ Microbiol 11: 31793188.
  • Michaud AB, Šabacká M & Priscu JC (2012) Cyanobacterial diversity across landscape units in a polar desert: Taylor Valley, Antarctica. FEMS Microbiol Ecol 82: 268278.
  • Moon-van der Staay SY, De Wachter R & Vaulot D (2001) Oceanic 18S rDNA sequences from picoplankton reveal unsuspected eukaryotic diversity. Nature 409: 607610.
  • Neefs JM & De Wachter R (1990) A proposal of the secondary structure of a variable area of eukaryotic small ribosomal subunit RNA involving the existence of a pseudoknot. Nucleic Acids Res 18: 56955704.
  • Němcová Y, Eliáš M, Škaloud P, Hodač L & Neustupa J (2011) Jenufa gen. nov.: a new genus of coccoid green algae (Chlorophyceae, incertae sedis) previously recorded by environmental sequencing. J Phycol 47: 928938.
  • Norris TB & Castenholz RW (2006) Endolithic photosynthetic communities within ancient and recent travertine deposits in Yellowstone National Park. FEMS Microbiol Ecol 57: 470483.
  • Oren A & Seckbach J (2001) Oxygenic photosynthetic organisms in extreme environments. Nova Hedwigia Beih 123: 1331.
  • Ortega-Calvo JJ, Hernandez-Marine M & Saiz-Jimenez C (1991) Biodeterioration of building materials by cyanobacteria and algae. Int Biodeterior Biodegradation 28: 165185.
  • Pawlowski J, Audic S, Adl S et al. (2012) CBOL protist working group: barcoding eukaryotic richness beyond the animal, plant and fungal kingdoms. PLoS Biol 10: e1001419.
  • Pereira S, Zille A, Micheletti E, Moradas-Ferreira P, De Philippis R & Tamagnini P (2009) Complexity of cyanobacterial exopolysaccharides: composition, structures, inducing factors and putative genes involved in their biosynthesis and assembly. FEMS Microbiol Rev 33: 917941.
  • Pniewski F, Friedl T & Latała A (2010) Identification of diatom isolates from the Gulf of Gdańsk: testing of species identifications using morphology, 18S rDNA sequencing and DNA barcodes of strains from the culture collection of Baltic Algae (CCBA). Oceanol Hydrobiol Stud 39: 320.
  • Potapova M & Hamilton PB (2007) Morphological and ecological variation within the Achnanthidium minutissimum (Bacillariophyceae) species complex. J Phycol 43: 561575.
  • Poulíčková A & Hašler P (2007) Aerophytic diatoms from caves in central Moravia (Czech Republic). Preslia 79: 185204.
  • Ragon M, Fontaine MC, Moreira D & López-García P (2012) Different biogeographic patterns of prokaryotes and microbial eukaryotes in epilithic biofilms. Mol Ecol 21: 38523868.
  • Rindi F (2007) Diversity, ecology and distribution of green algae and Cyanobacteria in urban habitats. Algae and Cyanobacteria in Extreme Environments (Seckbach J, ed), pp. 621640. Springer Verlag, Dordrecht, the Netherlands.
  • Rindi F, Allali HA, Lam DW, López-Bautista JM (2009) An overview of the biodiversity and biogeography of terrestrial green algae. Biodiversity Hotspots (Rescigno V et al., eds), Nova Science Publishers, Inc., New York.
  • Rippka R & Herdman M (1993) Pasteur culture collection of cyanobacterial strains in axenic culture. Catalogue of Strains, Vol. 1, pp. 103. Institut Pasteur, Paris.
  • Robertson BR, Tezuka N & Watanabe MM (2001) Phylogenetic analyses of Synechococcus strains (cyanobacteria) using sequences of 16S rDNA and part of the phycocyanin operon reveal multiple evolutionary lines and reflect phycobilin content. Int J Syst Evol Microbiol 51: 861871.
  • Romari K & Vaulot D (2004) Composition and temporal variability of picoeukaryote communities at a coastal site of the English Channel from 18S rDNA sequences. Limnol Oceanogr 49: 784798.
  • Saiz-Jiminez C, Garcia-Rowe J, Garcia Del Cura MA, Ortega-Calvo JJ, Roeskens E & Van Grieken R (1990) Endolithic cyanobacteria in Maastricht limestone. Sci Total Environ 94: 209220.
  • Sambrook J, MacCallum P & Russel D (2000) Molecular Cloning: A Laboratory Manual, 3rd edn. CSH Laboratory Press, Cold Spring Harbour, NY.
  • Santamaria M, Fosso B, Consiglio A et al. (2012) Reference database for taxonomic assignment in metagenomics. Brief Bioinform. doi:10.1093/bib/bbs036.
  • Santos HF, Cury JC, Carmo FL, Rosado AS & Peixoto RS (2010) 18S rDNA sequences from microeukaryotes reveal oil indicators in mangrove sediment. PLoS ONE 5: e12437.
  • Schagerl M (1991) Die Algen der Lampenflora in der Hermannshöhle bei Kirchberg/Wechsel (Niederösterreich). Verh Zool-Bot Ges Österreich 128: 83106.
  • Schloss PD, Westcott SL, Ryabin T et al. (2009) Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol 75: 75377541.
  • Schultze-Lam S & Beveridge TJ (1994) Physicochemical characteristics of the mineral-forming S-layer from the cyanobacterium Synechococcus strain GL24. Can J Microbiol 40: 216223.
  • Shepherd VA & Beilby MJ (1999) The effect of an extracellular mucilage on the response to osmotic shock in the charophyte alga Lamprothamnium papulosum. J Membr Biol 170: 229242.
  • Shields LM & Durell LW (1964) Algae in relation to soil fertility. Bot Rev 30: 92128.
  • Škaloud P (2009) Species composition and diversity of aero-terrestrial algae and cyanobacteria of the Boreč Hill ventaroles. Fottea 9: 6580.
  • Stamatakis A, Hoover P & Rougemont J (2008) A rapid bootstrap algorithm for the RAxML web-servers. Syst Biol 57: 758771.
  • Starks TL, Shubert LE & Trainor FR (1981) Ecology of soil algae: a review. Phycologia 20: 6580.
  • Starr RC & Zeikus JA (1993) UTEX – The culture collection of algae at the University of Texas at Austin. J Phycol Suppl 29: 1106.
  • Stivaletta N, López-García P, Boihem L, Millie DF & Barbieri R (2010) Biomarkers of endolithic communities within gypsum crusts (Southern Tunisia). Geomicrobiol J 27: 101110.
  • Stock A, Breiner HW, Pachiadaki M, Edgcomb V, Filker S, La Cono V, Yakimov MM & Stoeck T (2012) Microbial eukaryote life in the new hypersaline deep-sea basin Thetis. Extremophiles 16: 2134.
  • Stück H, Siegesmund S & Rüdrich J (2011) Weathering behaviour and construction suitability of dimension stones from the Drei Gleichen area (Thuringia, Germany). Environ Earth Sci 63: 17631786.
  • Uher B (2008) Spatial distribution of cyanobacteria and algae from the tombstone in a historic cemetery in Bratislava, Slovakia. Fottea 9: 8192.
  • Walker JJ & Pace NR (2007) Endolithic microbial ecosystems. Annu Rev Microbiol 61: 331347.
  • Warscheid T, Oelting M & Krumbein WE (1991) Physico-chemical aspects of biodeterioration processes on rocks with special regard to organic pollutants. Int Biodeterior Biodegradation 28: 3748.
  • Welton RG, Cuthbert SJ, McLean R, Hursthouse A & Hughes J (2003) A preliminary study of the phycological degradation of natural stone masonry. Environ Geochem Health 25: 139145.
  • Wilmotte A, Van der Auwera G & De Wachter R (1993) Structure of the 16S ribosomal RNA of the thermophilic cyanobacterium Chlorogloeopsis HTF (‘Mastigocladus laminosus HTF’) strain PCC7518, and phylogenetic analysis. FEBS Lett 317: 96100.
  • Wong FK, Lacap DC, Lau MC, Aitchison JC, Cowan DA & Pointing SB (2010) Hypolithic microbial community of quartz pavement in the high-altitude tundra of central Tibet. Microb Ecol 60: 730739.
  • Zammit G, Billi D, Shubert E, Kaštovský J & Albertano P (2011) The biodiversity of subaerophytic phototrophic biofilms from Maltese hypogea. Fottea 11: 187201.
  • Zancan S, Trevisan R & Paoletti MG (2006) Soil algae composition under different agro-ecosystems in North-Eastern Italy. Agric Ecosyst Environ 112: 112.
  • Zimmermann J, Jahn R & Gemeinholzer B (2011) Barcoding diatoms: evaluation of the V4 subregion on the 18S rRNA gene, including new primers and protocols. Org Divers Evol 11: 173192.