SEARCH

SEARCH BY CITATION

References

  • Amann RI, Binder BJ, Olson RJ, Chisholm SW, Devereux R & Stahl DA (1990) Combination of 16s rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations. Appl Environ Microbiol 56: 19191925.
  • Bénézeth P, Ménez B & Noiriel C (2009) CO2 geological storage: integrating geochemical, hydrodynamical, mechanical and biological processes from the pore to the reservoir scale. Chem Geol 265: 12.
  • Bickle MJ (2009) Geological carbon storage. Nat Geosci 2: 815818.
  • Briggs BR, Inagaki F, Morono Y, Futagami T, Huguet C, Rosell-Mele A, Lorenson TD & Colwell FS (2012) Bacterial dominance in subseafloor sediments characterized by methane hydrates. FEMS Microbiol Ecol 81: 8898.
  • Caporaso JG, Kuczynski J, Stombaugh J et al. (2010) Qiime allows analysis of high-throughput community sequencing data. Nat Methods 7: 335336.
  • DeLong EF (1992) Archaea in coastal marine environments. PNAS 89: 56855689.
  • D'Hondt S, Jorgensen BB, Miller DJ et al. (2004) Distributions of microbial activities in deep subseafloor sediments. Science 306: 22162221.
  • Erwin DP, Erickson IK, Delwiche ME, Colwell FS, Strap JL & Crawford RL (2005) Diversity of oxygenase genes from methane- and ammonia-oxidizing bacteria in the eastern Snake River Plain Aquifer. Appl Environ Microbiol 71: 20162025.
  • Fredrickson JK & Balkwill DL (2006) Geomicrobial processes and biodiversity in the deep terrestrial subsurface. Geomicrobiol J 23: 345356.
  • Fry N, Fredrickson J, Fishbain S, Wagner M & Stahl D (1997) Population structure of microbial communities associated with two deep, anaerobic, alkaline aquifers. Appl Environ Microbiol 63: 14981504.
  • German CR, Bowen A, Coleman ML et al. (2010) Diverse styles of submarine venting on the ultraslow spreading Mid-Cayman Rise. PNAS 107: 1402014025.
  • Goldberg DS, Takahashi T & Slagle AL (2008) Carbon dioxide sequestration in deep-sea basalt. PNAS 105: 99209925.
  • Gulliver D & Gregory K (2011) CO2 gradient affects on deep subsurface microbial ecology during carbon sequestration. AGU Fall Meeting Abstracts 1: 0553.
  • Gunter WD, Bachu S & Benson S (2004) The Role of Hydrogeological and Geochemical Trapping in Sedimentary Basins for Secure Geological Storage of Carbon Dioxide. Geological Society, London, Special Publications 233:129145.
  • Hallbeck L & Pedersen K (2008) Characterization of microbial processes in deep aquifers of the Fennoscandian Shield. Appl Geochem 23: 17961819.
  • Hirsch P, Eckhardt FEW & Palmer RJ Jr (1995) Methods for the study of rock-inhabiting microorganisms – a mini review. J Microbiol Meth 23: 143167.
  • Hou Y, Zhang H, Miranda L & Lin S (2010) Serious overestimation in quantitative PCR by circular (supercoiled) plasmid standard: microalgal pcna as the model gene. PLoS ONE 5: e9545.
  • Lehman RM, O'Connell SP, Banta A, Fredrickson JK, Reysenbach A-L, Kieft TL & Colwell FS (2004) Microbiological comparison of core and groundwater samples collected from a fractured basalt aquifer with that of dialysis chambers incubated in situ. Geomicrobiol J 21: 169182.
  • Lin L-H, Wang P-L, Rumble D et al. (2006) Long-term sustainability of a high-energy, low-diversity crustal biome. Science 314: 479482.
  • Lozupone C & Knight R (2005) Unifrac: a new phylogenetic method for comparing microbial communities. Appl Environ Microbiol 71: 82288235.
  • MacLean LCW, Pray TJ, Onstott TC, Brodie EL, Hazen TC & Southam G (2007) Mineralogical, chemical and biological characterization of an anaerobic biofilm collected from a borehole in a deep gold mine in South Africa. Geomicrobiol J 24: 491504.
  • Mason OU, Di Meo-Savoie CA, Van Nostrand JD, Zhou J, Fisk MR & Giovannoni SJ (2008) Prokaryotic diversity, distribution, and insights into their role in biogeochemical cycling in marine basalts. ISME J 3: 231242.
  • Matter JM, Takahashi T & Goldberg D (2007) Experimental evaluation of in situ CO2-water-rock reactions during CO2 injection in basaltic rocks: implications for geological CO2 sequestration. Geochem Geophy Geosy 8: Q02001, doi: 10.1029/2006GC001427.
  • McGrail P, Schaef T, Ho A, Chien Y-J, Dooley J & Davidson C (2006) Potential for carbon dioxide sequestratioin in flood basalts. J Geophys Res 111: doi: 10.1029/2005JB004169.
  • McGrail B, Sullivan E, Spane F, Bacon DH, Hund G, Thorne PD, Thompson CJ, Reidel SP & Colwell FS (2009) Preliminary Hydrogeologic Characterization Results from the Wallula Basalt Pilot Study. Battelle, Pacifc Northwest Division, Richland, WA.
  • Morozova D, Wandrey M, Alawi M, Zimmer M, Vieth A, Zettlitzer M & Wurdemann H (2010) Monitoring of the microbial community composition in saline aquifers during CO2 storage by fluorescence in situ hybridisation. IJGGC 4: 981989.
  • Newby DT, Reed DW, Petzke LM, Igoe AL, Delwiche ME, Roberto FF, McKinley JP, Whiticar MJ & Colwell FS (2004) Diversity of methanotroph communities in a basalt aquifer. FEMS Microbiol Ecol 48: 333344.
  • O'Connell SP, Lehman RM, Snoeyenbos-West O, Winston VD, Cummings DE, Watwood ME & Colwell FS (2003) Detection of Euryarchaeota and Crenarchaeota in an oxic basalt aquifer. FEMS Microbiol Ecol 44: 165173.
  • Onstott T (2005) Impact of CO2 injections on deep subsurface microbial ecosystems and potential ramifications for the surface biosphere. The CO2 Capture and Storage Project 2: 12071239.
  • Onstott TC, Phelps TJ, Kieft T, Colwell FS, Balkwill DL, Fredrickson JK & Brockman FJ (1999) A global perspective on the microbial abundance and activity in the deep subsurface. Enigmatic Microorganisms and Life in Extreme Environments (Seckbach J, ed), pp. 489500. Kluwer Academic, Dordrechet.
  • Orr FM (2009) Onshore geologic storage of CO2. Science 325: 16561658.
  • Pacala S & Socolow S (2004) Stabilization wedges: solving the climate problem for the next 50 years with current technologies. Science 305: 968972.
  • Parkes RJ, Cragg BA, Bale SJ , Getlifff JM, Goodman K, Rochelle PA, Fry JC, Weightman AJ & Harvey SM (1994) Deep bacterial biosphere in Pacific Ocean sediments. Nature 371: 410413.
  • Parkes RJ, Webster G, Cragg BA, Weightman AJ, Newberry CJ, Ferdelman TG, Kallmeyer J, Jorgensen BB, Aiello IW & Fry JC (2005) Deep sub-seafloor prokaryotes stimulated at interfaces over geological time. Nature 436: 390394.
  • Pedersen K (1999) Evidence for a hydrogen-driven, intra-terrestrial biosphere in deep granitic rock aquifers. Proceedings of the 8th International Symposium on Microbial Ecology (Bell CR, Brylinsky M & Johnson-Green P, eds), Atlantic Canada Society for Microbial Ecology, Halifax, Canada.
  • Rastogi G, Stetler L, Peyton B & Sani R (2009) Molecular analysis of prokaryotic diversity in the deep subsurface of the former homestake gold mine, South Dakota, USA. J Microbiol 47: 371384.
  • Schaef T & McGrail P (2009) Dissolution of Columbia River basalt under mildly acidic conditions as a function of temperature: experimental results relevant to the geological sequestration of carbon dioxide. Appl Geochem 24: 980987.
  • Sinclair JL & Ghiorse WC (1989) Distribution of aerobic bacteria, protozoa, algae, and fungi in deep subsurface sediments. Geomicrobiol J 7: 1531.
  • Stevens TO & McKinley JP (1995) Lithoautotrophic microbial ecosystems in deep basalt aquifers. Science 270: 450455.
  • Stevens TO, McKinley JP & Fredrickson J (1993) Bacteria associated with deep, alkaline, anaerobic groundwaters in southeast Washington. Microbial Ecol 25: 3550.
  • Torsvik V, Øvreås L & Thingstad TF (2002) Prokaryotic diversity–magnitude, dynamics, and controlling factors. Science 296: 10641066.
  • Vreeland RH, Rosenzweig WD & Powers DW (2000) Isolation of a 250 million-year-old halotolerant bacterium from a primary salt crystal. Nature 407: 897900.
  • Wandrey M, Pellizari L, Zettlitzer M & Wurdemann H (2011) Microbial community and inorganic fluid analysis during CO2 storage within the frame of CO2 sink-long-term experiments under in situ conditions. Energy Procedia 4: 36513657.
  • Zhang T & Fang H (2006) Applications of real-time polymerase chain reaction for quantification of microorganisms in environmental samples. Appl Microbiol Biot 70: 281289.