Influence of oxic/anoxic fluctuations on ammonia oxidizers and nitrification potential in a wet tropical soil
Article first published online: 4 APR 2013
© 2013 Federation of European Microbiological Societies. Published by Blackwell Publishing Ltd. All rights reserved
FEMS Microbiology Ecology
Volume 85, Issue 1, pages 179–194, July 2013
How to Cite
Pett-Ridge, J., Petersen, D. G., Nuccio, E. and Firestone, M. K. (2013), Influence of oxic/anoxic fluctuations on ammonia oxidizers and nitrification potential in a wet tropical soil. FEMS Microbiology Ecology, 85: 179–194. doi: 10.1111/1574-6941.12111
- Issue published online: 18 JUN 2013
- Article first published online: 4 APR 2013
- Accepted manuscript online: 12 MAR 2013 04:33AM EST
- Manuscript Accepted: 4 MAR 2013
- Manuscript Revised: 27 FEB 2013
- Manuscript Received: 3 OCT 2012
- DOE Global Change Education Program
- Carlsberg Foundation
- Danish National Research Foundation
- Max Planck Society
- DOE Genomic Sciences Program. Grant Number: FOA DE-PS02-09ER09-25
Table S1. Conditions used for quantitative PCR of group specific one primers.
Table S2. Reference sequences and associated Pester et al. (2012) phylogeny used to overlay amoA phylogenetic clusters on the global AOA tree.
Table S3. Correlation statistics for archaeal amoA gene abundances (g−1 soil and /total bacteria+archaea) and environmental variables
Fig. S1. Rarefaction analysis of unique and 98% identity sequenced amoA clones from three forest types in the Luquillo Experimental Forest, Puerto Rico: high-elevation cloud forest, mid-elevation colorado forest and low-elevation tabonuco forest.
Fig. S2. Global amoA maximum likelihood tree with branches colored by confidence scores for each split (green > 75% support, yellow > 50% support, red < 50% support).
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