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  • Agin H, Ayhan Y, Devrim I, Gülfidan G, Tulumoglu S & Kayserili E (2011) Fluconazole-, amphotericin-B-, caspofungin-, and anidulafungin-resistant Candida ciferrii: an unknown cause of systemic mycosis in a child. Mycopathologia 172: 237239.
  • Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, Miller W & Lipman JD (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25: 33893402.
  • Amoroso GG & Fassina V (1983) Stone Decay and Conservation. Elsevier, Amsterdam.
  • Arya A, Shah AR & Sadasivan S (2001) Indoor aeromycoflora of Baroda museum and deterioration of Egyptian mummy. Curr Sci 81: 793799.
  • Ast JC & Dunlap PV (2005) Phylogenetic resolution and habitat specificity of members of the Photobacterium phosphoreum species group. Environ Microbiol 7: 16411654.
  • Aufderheide AC (2003) The Scientific Study of Mummies. Cambridge University Press, Cambridge.
  • Bernard KA, Munro C, Wiebe D & Ongsansoy E (2002) Characteristics of rare or recently described Corynebacterium species recovered from human clinical material in Canada. J Clin Microbiol 40: 43754381.
  • Brito EM, Guyoneaud R, Goñi-Urriza M, Ranchou-Peyruse A, Verbaere A, Crapez MA, Wassermana JCA & Duran R (2006) Characterization of hydrocarbonoclastic bacterial communities from mangrove sediments in Guanabara Bay, Brazil. Res Microbiol 157: 752762.
  • Brüggeman H, Baumer S, Fricke WF et al. (2003) The genome sequence of Clostridium tetani, the causative agent of tetanus disease. P Natl Acad Sci USA 100: 13161321.
  • Cano RJ, Tiefenbrunner F, Ubaldi M, del Cueto C, Luciani S, Cox T, Orkand P, Künzel KH & Rollo F (2000) Sequence analysis of bacterial DNA in the colon and stomach of the Tyrolean Iceman. Am J Phys Anthropol 112: 297309.
  • Cao ZJ, Zhang Q, Wei DK, Chen L, Wang J, Zhang XQ & Zhou MH (2009) Characterization of a novel Stenotrophomonas isolate with high keratinase activity and purification of the enzyme. J Ind Microbiol Biotechnol 36: 181188.
  • Čavka M, Glasnović A, Janković I, Šikanjić PR, Perić B, Brkljačić B, Mlinarić-Missoni E & Škrlin J (2010) Microbiological analysis of a mummy from the archeological museum in Zagreb. Coll Antropol 34: 803805.
  • Cole JR, Wang Q, Cardenas E et al. (2009) The Ribosomal Database Project: improved alignments and new tools for rRNA analysis. Nucleic Acids Res 37: D141D145.
  • Crous PW, Braum U & Groenewald JZ (2007) Mycosphaerella is polyphyletic. Stud Mycol 58: 132.
  • Davis KE, Sangwan P & Jansen PH (2011) Acidobacteria, Rubrobacteridae and Chloroflexi are abundant among very slow-growing and mini-colony-forming soil bacteria. Environ Microbiol 13: 798805.
  • Daynes CN, Zhang N, Saleeba JA & McGee PA (2012) Soil aggregates formed in vitro by saprotrophic Trichocomaceae have transient water-stability. Soil Biol Biochem 48: 151161.
  • De Vos JP, van Garderen E, Hensen H, Tange I, Curfs-Breuker I, Vandevelde B & Meis JF (2009) Disseminated Penicillium radicum infection in a dog, clinically resembling multicentric malignant lymphoma. Vlaams Diergen Tijds 78: 183188.
  • Drancourt M & Raoult D (2005) Palaeomicrobiology: current issues and perspectives. Nat Rev Microbiol 3: 2335.
  • Ettenauer J, Sterflinger K & Piñar G (2010) Cultivation and molecular monitoring of halophilic microorganisms inhabiting an extreme environment presented by a salt-attacked monument. Int J Astrobiol 9: 5972.
  • Fernandez PL (2012) Palaeopathology: the study of disease in the past. Pathobiology 79: 221227.
  • Field EK, D'Imperio S, Miller AR, VanEngelen MR, Gerlach R, Lee BD, Apel BA & Peyton BM (2010) Application of molecular techniques to elucidate the influence of cellulosic waste on the bacterial community structure at a simulated low-level-radioactive-waste site. Appl Environ Microbiol 76: 31063115.
  • Gené J, Blanco JL, Cano J, Garcia ME & Guarro J (2003) New filamentous fungus Sagenomella chlamydospora responsible for a disseminated infection in a dog. J Clin Microbiol 41: 17221725.
  • Grice EA, Kong HH, Conlan S et al. (2009) Topographical and temporal diversity of the human skin microbiome. Science 324: 11901192.
  • Groudieva T, Kambourova M, Yusef H, Royter M, Grote R, Trinks H & Antranikian G (2004) Diversity and cold-active hydrolytic enzymes of culturable bacteria associated with Arctic sea ice, Spitzbergen. Extremophiles 8: 475488.
  • Grupe G & Dreses-Werringloer U (1993) Decomposition phenomena in thin sections of excavated human bones. Histology of Ancient Human Bone: Methods and Diagnosis (Grupe G, & Garlan AN, eds), pp 2736. Springer, New York, NY.
  • Gunde-Cimerman N, Ramos J & Plemenitas A (2009) Halotolerant and halophilic fungi. Mycol Res 113: 12311241.
  • Gunsilius E, Lass-Flörl C, Kähler CM, Gastl G & Petzer AL (2001) Candida ciferrii, a new fluconazole-resistant yeast causing systemic mycosis in immunocompromised patients. Ann Hematol 80: 178179.
  • Harvey I, Cormier Y, Beaulieu C, Akimov VN, Meriaux A & Duchaine C (2001) Random amplified ribosomal DNA restriction analysis for rapid identification of thermophilic Actinomycete-like bacteria involved in hypersensitivity pneumonitis. Syst Appl Microbiol 24: 277284.
  • Heuer H, Hartung K, Wieland G, Kramer I & Smalla K (1999) Polynucleotide probes that target a hypervariable region of 16S rRNA genes to identify bacterial isolates corresponding to bands of community fingerprints. Appl Environ Microbiol 65: 10451049.
  • Heyrman J, Balcaen A, de Vos P, Schumann P & Swings J (2002) Brachybacterium fresconis sp. nov. and Brachybacterium sacelli sp. nov., isolated from deteriorated parts of a medieval wall painting of the chapel of Castle Herberstein (Austria). Int J Syst Evol Microbiol 52: 16411646.
  • Heyrman J, Verbeeren J, Schumann P, Swings J & de Vos P (2005) Six novel Arthrobacter species isolated from deteriorated mural paintings. Int J Syst Evol Microbiol 55: 14571464.
  • Hodges TW, Slattery M & Olson JB (2012) Unique actinomycetes from marine caves and coral reef sediments provide novel PKS and NRPS biosynthetic gene clusters. Mar Biotechnol 14: 270280.
  • Hsieh HM, Ju YM, Hsueh PR, Lin HY, Hu FR & Chen WL (2009) Fungal keratitis caused by a new filamentous hyphomycete Sagenomella keratitidis. Bot Stud 50: 331335.
  • Imperi F, Caneva G, Cancellieri L, Ricci MA, Sodo A & Visca P (2007) The bacterial aetiology of rosy discoloration of ancient wall paintings. Environ Microbiol 9: 28942902.
  • Izumi H, Gauthier ME, Degnan BM, Ng YK, Hewavitharana AK, Shaw PN & Fuerst JA (2010) Diversity of Mycobacterium species from marine sponges and their sensitivity to antagonism by sponge-derived rifamycin-synthesizing actinobacterium in the genus Salinispora. FEMS Microbiol Lett 313: 3340.
  • Jurado V, Porca E, Pastrana MP, Cuezva S, Fernandez-Cortes A & Saiz-Jimenez C (2010) Microbiological study of Bulls of indulgence of the 15th–16th centuries. Sci Total Environ 408: 37113715.
  • Jurado V, Miller AZ, Alias-Villegas C, Laiz L & Saiz-Jimenez C (2012) Rubrobacter bracarensis sp. nov., a novel member of the genus Rubrobacter isolated from a biodeteriorated monument. Syst Appl Microbiol 35: 306309.
  • Kong HH, Oh J, Deming C et al. (2012) Temporal shifts in the skin microbiome associated with disease flares and treatment in children with atopic dermatitis. Genome Res 22: 850859.
  • Kumar M, Verma M & Lal R (2008) Devosia chinhatensis sp. nov., isolated from a hexachlorocyclohexane (HCH) dump site in India. Int J Syst Evol Microbiol 58: 861865.
  • La Genussa M, Rizzo G, Scanccianoce G & Nicoletti F (2005) Control of indoor environments in heritage buildings: experimental measurements in an old Italian museum and proposal of a methodology. J Cult Herit 6: 147155.
  • Laiz L, Miller AZ, Jurado V, Akatova E, Sanchez-Moral S, Gonzalez JM, Dionísio A, Macedo MF & Saiz-Jimenez C (2009) Isolation of five Rubrobacter strains from biodeteriorated monuments. Naturwissenschaften 96: 7179.
  • Lednická D, Mergaert J, Cnockaert MC & Swings J (2000) Isolation and identification of cellulolytic bacteria involved in the degradation of natural cellulosic fibres. Syst Appl Microbiol 23: 292299.
  • Lee SD (2008) Jiangella alkaliphila sp. nov., an actinobacterium isolated from a cave. Int J Syst Evol Microbiol 58: 11761179.
  • Lee SD, Lee DW & Kim JS (2008) Nocardioides hwasunensis sp. nov. Int J Syst Evol Microbiol 58: 278281.
  • Lücker S, Wagner M, Maixner F et al. (2010) A Nitrospira metagenome illuminates the physiology and evolution of globally important nitrite-oxidizing bacteria. P Natl Acad Sci USA 107: 1347913484.
  • Macdonald TE, Helma CH, Shou Y et al. (2011) Analysis of Clostridium botulinum serotype E strains by using multilocus sequence typing, amplified fragment length polymorphism, variable-number tandem-repeat analysis, and botulinum neurotoxin gene sequencing. Appl Environ Microbiol 77: 86258634.
  • Maciá-Vicente JG, Ferraro V, Burruano S & Lopez-Llorca LV (2012) Fungal assemblages associated with roots of halophytic and non-halophytic plant species vary differentially along a salinity gradient. Microb Ecol 64: 668679.
  • Masaki T, Ohkusu K, Hata H et al. (2006) Mycobacterium kumamotonense sp. Nov. recovered from clinical specimen and the first isolation report of Mycobacterium arupense in Japan: novel slowly growing, nonchromogenic clinical isolates related to Mycobacterium terrae complex. Microbiol Immunol 50: 889897.
  • Michaelsen A, Pinzari F, Ripka K, Lubitz W & Piñar G (2006) Application of molecular techniques for the identification of fungal communities colonising paper material. Int Biodeterior Biodegradation 58: 133141.
  • Mouchaca J (1985) Les champignons. La momie de Ramses II (Balout DL, & Roubet C, eds), pp 119152. Editions Recherches sur les Civilisations, Paris.
  • Muyzer G, De Waal EC & Uitterlinden AG (1993) Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl Environ Microbiol 59: 695700.
  • Neefs JM, Van de Peer Y, Hendriks L & De Wachter R (1990) Compilation of small ribosomal subunit RNA sequences. Nucleic Acids Res 18: 22372317.
  • Nogi Y, Takami H & Horikoshi K (2005) Characterization of alkaliphilic Bacillus strains used in industry: proposal of five novel species. Int J Syst Evol Microbiol 55: 23092315.
  • Oren A (2009) Microbial diversity and microbial abundance in salt-saturated brines: why are the waters of hypersaline lakes red? Nat Resour Environ Issues: Vol 15, Article 49.
  • Pangallo D, Kraková L, Chovanová K, Bucková M, Puskarová A & Simonovicová A (2013) Disclosing a crypt: microbial diversity and degradation activity of the microflora isolated from funeral clothes of Cardinal Peter Pázmány. Microbiol Res 168: 289299.
  • Piñar G, Saiz-Jimenez C, Schabereiter-Gurtner C, Blanco-Valera MT, Lubitz W & Rölleke S (2001) Archaeal communities in two disparate deteriorated ancient wall paintings: detection, identification and temporal monitoring by denaturing gradient gel electrophoresis. FEMS Microbiol Ecol 37: 4554.
  • Piñar G, Ripka K, Weber J & Sterflinger K (2009) The micro-biota of a sub-surface monument: the medieval chapel of St. Virgil (Vienna, Austria). Int Biodeterior Biodegradation 63: 851859.
  • Piñar G, Pinzari F & Sterflinger K (2011) Modern technologies as basis for the preservation of parchment. Proceedings of the 18th International Meeting on Heritage Conservation. López Montes AM, Collado Montero F, Medina Flórez V, Espejo Arias T & García Bueno A (eds). University of Granada, Spain, pp. 250253.
  • Piñar G, Garcia-Valles M, Gimeno-Torrente D, Fernandez-Turiel JL, Ettenauer J & Sterflinger K (2013) Microscopic, chemical, and molecular-biological investigation of the decayed medieval stained window glasses of two Catalonian churches. Int Biodeterior Biodegradation, in press. DOI:10.1016/j.ibiod.2012.02.008.
  • Piombino-Mascali D, Aufderheide AC, Panzer S & Zink AR (2010) Mummies from Palermo. Mummies of the World (Wieczorek A, & Rosendahl W, eds), pp 357361. Prestel, New York, NY.
  • Piombino-Mascali D, Panzer S, Marvelli S, Lösch S, Aufderheide AC & Zink AR (2011) The “Sicily Mummy Project”: first results of the scientific campaigns (2007–2010). Geschichte und Tradition der Mumifizierung in Europa. (Sörries R, ed). Kasseler Studien zur Sepulkralkultur 18: 2531.
  • Raskin L, Stromley JM, Rittmann BE & Stahl DA (1994) Group-specific 16S rRNA hybridization probes to describe natural communities of methanogens. Appl Environ Microbiol 60: 12321240.
  • Rezgui R, Maaroufi A, Fardeau ML, Ben Ali Gam Z, Cayol JL, Ben Hamed S & Labat M (2012) Anaerosalibacter bizertensis gen. nov., sp. nov., a halotolerant bacterium isolated from sludge. Int J Syst Evol Microbiol 62: 24692474.
  • Rollo F, Luciani S, Canapa A & Marota I (2000) Analysis of bacterial DNA in skin and muscle of the Tyrolean Iceman offers new insight into the mummification process. Am J Phys Anthropol 111: 211219.
  • Saiz-Jimenez C & Laiz L (2000) Occurrence of halotolerant/halophilic bacterial communities in deteriorated monuments. Int Biodeterior Biodegradation 46: 319326.
  • Sambrook J, Fritsch EF & Maniatis T (1989) Molecular Cloning: A Laboratory Manual, 2nd edn. Cold Spring Harbour Laboratory, Cold Spring Harbour, New York, NY.
  • Schabereiter-Gurtner C, Piñar G, Lubitz W & Rölleke S (2001) An advanced molecular strategy to identify bacterial communities on art objects. J Microbiol Methods 45: 7787.
  • Schäfer S, Jäckel U & Kämpfer P (2010) Analysis of Actinobacteria from mould-colonized water damaged building material. Syst Appl Microbiol 33: 260268.
  • Schauer F & Hanschke R (1999) Taxonomy and ecology of the genus Candida. Mycoses 42: 1221.
  • Sert HB & Sterflinger K (2010) A new Coniosporium species from historical marble monuments. Mycol Prog 9: 353359.
  • Sigler L, Sutton DA, Gibas CF, Summerbell RC, Noel RK & Iwen PC (2010) Phialosimplex, a new anamorphic genus associated with infections in dogs and having phylogenetic affinity to the Trichocomaceae. Med Mycol 48: 3545.
  • Tauch A, Schneider J, Szczepanowski R et al. (2008) Ultrafast pyrosequencing of Corynebacterium kroppenstedtii DSM44385 revealed insights into the physiology of a lipophilic corynebacterium that lacks mycolic acids. J Biotechnol 136: 2230.
  • UNI 10829. (1999) Works of Art of Historical Importance. Ambient Condition for the Conservation. Measurement and Analysis. UNI Ente Nazionale Italiano di Unificazione, Milano [in Italian].
  • UNI 10969. (2002) Cultural Heritage. General Principles for the Choice and the Control of the Microclimate to Preserve Cultural Heritage in Indoor Environments. UNI Ente Nazionale Italiano di Unificazione, Milano [in Italian].
  • Wang X, Xue Y & Ma Y (2009) Sediminibacillus albus sp. nov., a moderately halophilic, Gram-positive bacterium isolated from a hypersaline lake, and emended description of the genus Sediminibacillus Carrasco et al. 2008. Int J Syst Evol Microbiol 59: 16401644.
  • White TJ, Bruns T, Lee S & Taylor J (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. PCR Protocols: A Guide to Methods and Applications, pp. 315322. Academic Press, New York, NY.
  • Whitelaw MA, Harden TJ & Helyar KR (1999) Phosphate solubilisation in solution culture by the soil fungus Penicillium radicum. Soil Biol Biochem 31: 655665.
  • Williamson KE, Kan J, Polson SW & Williamson SJ (2011) Optimizing the indirect extraction of prokaryotic DNA from soils. Soil Biol Biochem 43: 736748.
  • Zhang G, Zeng G, Cai X, Deng S, Luo H & Sun G (2007) Brachybacterium zhongshanense sp. nov., a cellulose-decomposing bacterium from sediment along the Qijiang River, Zhongshan City, China. Int J Syst Evol Microbiol 57: 25192524.
  • Zink AR, Reischl U, Wolf H & Nerlich AG (2002) Molecular analyses of ancient microbial infections. FEMS Microbiol Lett 213: 141147.
  • Zink AR, Sola C, Reischl U, Grabner W, Rastogi N, Wolf H & Nerlich AG (2003) Characterization of Mycobacterium tuberculosis Complex DNAs from Egyptian Mummies by Spoligotyping. J Clin Microbiol 41: 359367.