SEARCH

SEARCH BY CITATION

References

  • Abadias M, Teixidó N, Usall J, Benabarre A & Viñas I (2001) Viability, efficacy, and storage stability of freeze-dried biocontrol agent Candida sake using different protective and rehydration media. J Food Prot 64: 856861.
  • Alain K & Querellou J (2009) Cultivating the uncultured: limits, advances and future challenges. Extremophiles 13: 583594.
  • Angela JC, Gilpin B, Carter P, Nicol C & On SLW (2010) Comparison of PCR binary typing (P-BIT), a new approach to epidemiological subtyping of Campylobacter jejuni, with serotyping, pulsed-field gel electrophoresis, and multilocus sequence typing methods. Appl Environ Microbiol 76: 15331544.
  • Arrigo K (2005) Marine microorganisms and global nutrient cycles. Nature 437: 349355.
  • Benson EE & Bremner DH (2004) Oxidative stress in the frozen plant: a free radical point of view. Life in the Frozen State (Barry J, Fuller NL & Benson EE, eds), pp. 206241. CRC Press, Boca Raton, FL.
  • Berner D & Viernstein H (2006) Effects of protective agents on the viability of Lactococcus latis subjected to freeze-thawing and freezing drying. Sci Pharm 74: 137149.
  • Bhardwaj V & Garg (2012) Importance of exploration of microbial biodiversity. ISCA J Biological Sci 1: 7883.
  • Bodelier PL (2011) Toward understanding, managing, and protecting microbial ecosystems. Front Microbiol 2: 18.
  • Boumahdi M, Mary P, Hornez J-P & &, (1999) Influence of growth phases and desiccation on the degrees of unsaturation of fatty acids and the survival rates of rhizobia. J Appl Microbiol 87: 611619.
  • Broughton R, Buddie AG, Smith D & Ryan MJ (2012) The effect of cryopreservation on genomic stability in strains of the fungus Trichoderma. CryoLetters 33: 299306.
  • Bruns A, Cypionka H & Overmann J (2002) Cyclic AMP and acyl homoserine lactones increase the cultivation efficiency of heterotrophic bacteria from the Central Baltic Sea. Appl Environ Microbiol 68: 39783987.
  • Bryukhanov AL & Netrusov AI (2006) Long-term storage of obligate anaerobic microorganisms in glycerol. Appl Biochem Microbiol 42: 177180.
  • Carvalho AS, Silva J, Ho P, Teixeira P, Malcata FX & Gibbs P (2003) Effect of various growth media upon survival during storage of freeze-dried Enterococcus faecalis and Enterococcus durans. J Appl Microbiol 94: 947952.
  • Chian R-C (2010) Cryobiology: an overview. Fertility Cryopreservation (Chian R-C & Quinn R, eds), pp. 19. Cambridge University Press, Cambridge, Montréal.
  • Cockell CS & Jones HL (2009) Advancing the case for microbial conservation. Oryx 43: 520526.
  • Cody WL, Wilson JW, Hendrixson DR, Mclver KS, Wagman KE, Ott CM, Nickerson CA & Schurr MJ (2008) Skim milk enhances the preservation of thawed –80 C bacterial stocks. J Microbiol Methods 75: 135138.
  • Corcoran BM, Ross RP, Fitzgerald GF & Stanton C (2004) Comparative survival of probiotic lactobacilli spray-dried in the presence of prebiotic substances. J Appl Microbiol 96: 10241039.
  • Cornelius AJ, Gilpin B, Carter P, Nicol C, Stephen L & On W (2010) Comparison of PCR binary typing (P-BIT), a new approach to epidemiological subtyping of Campylobacter jejuni, with serotyping, pulsed-field gel electrophoresis, and multilocus sequence typing methods. Appl Environ Microbiol 76: 15331544.
  • Costa E, Usall J, Teixidó N, Garcia N & Viñas I (2000) Effect of protective agents, rehydration media and initial cell concentration on viability of Pantoea agglomerans strain CPA-2 subjected to freeze-drying. J Appl Microbiol 89: 793800.
  • Crespo MJ, Abarca ML & Cabanes FJ (2000) Evaluation of different preservation and storage methods for Mallassezia spp. J Clin Microbiol 38: 38723875.
  • Crowe JH, Carpenter JF & Crowe LM (1998) The role of vitrification in anhydrobiosis. Annu Rev Physiol 60: 73103.
  • Cypess R (2003) Biological Resource Centers: From Concept to Reality. American Type Culture Collection, Manassas.
  • De Kievit TR, Gillis R, Marx S, Brown C & Iglewski BH (2001) Quorum-sensing genes in Pseudomonas aeruginosa biofilms: their role and expression patterns. Appl Environ Microbiol 67: 18651873.
  • Dumont F, Marechal P-A & Gervais P (2004) Cell size and water permeability as determining factors for cell viability after freezing at different cooling rates. Appl Environ Microbiol 70: 268272.
  • Epstein SS (2009) Microbial awakenings. Nature 457: 1083.
  • Fleck R, Benson EE, Bremner DH & Day JG (2000) Studies of free radical-mediated cryoinjury in the unicellular green alga Euglena gracilis using a non-destructive hydroxyl radical assay: a novel approach for developing protistan cryopreservation strategies. Free Radic Res 32: 157170.
  • Fuller BJ (2004) Cryoprotectants: the essential antifreezes to protect life in the frozen state. CryoLetters 25: 375388.
  • Giovannoni S & Stingl U (2007) The importance of culturing bacterioplankton in the ‘omics’ age. Nat Rev 5: 820826.
  • Gomez Zavaglia A, Tymczyszyn EE, De Antoni G & Disalvo EA (2003) Action of trehalose on the preservation of Lactobacillus delbrueckii ssp. bulgaricus by heat and osmotic dehydration. J Appl Microbiol 95: 13151320.
  • Gorman R & Adley CCN (2004) An evolution of five preservation techniques and conventional freezing temperatures of -20 C and -85 C for long term preservation of Campylobacter jejuni. Lett Appl Microbiol 38: 306310.
  • Griffith GW (2012) Do we need a global strategy for microbial conservation? Trends Ecol Evol 27: 12.
  • Hayat R, Ali S, Amara U, Khalid R & Ahmed I (2010) Soil beneficial bacteria and their role in plant growth promotion: a review. Ann Microbiol 60: 579598.
  • Heylen K, Hoefman S, Vekeman B, Peiren J & De Vos P (2012) Safeguarding bacterial resources promotes biotechnological innovation. Appl Microbiol Biotechnol 94: 565574.
  • Hoefman S, Van Hoorde K, Boon N, Vandamme P, De Vos P & Heylen K (2012) Survival or revival: long-term preservation induces a reversible viable but non-culturable state in methane oxidizing bacteria. PLoS ONE 7: 19.
  • Hubalek Z (2003) Protectants used in the cryopreservation of microorganisms. Cryobiology 46: 205209.
  • Israeli E, Shaffer BT & Lighthart B (1993) Protection of freeze-dried Escherichia coli by trehalose upon exposure to environmental conditions. Cryobiology 30: 519523.
  • Jackson MA, Erhan S & Poprawski TJ (2006) Influence of formulation additives on the desiccation tolerance and storage stability of blastospores of the entomopathogenic fungus Paecilomyces fumosoroseus (Deuteromycotina: Hyphomycetes). Biocontrol Sci Technol 16: 6175.
  • Janssens D, Arahal DR, Bizet C & Garay E (2010) The role of public biological resource centers in providing a basic infrastructure for microbial research. Res Microbiol 16: 422429.
  • Kim K, Seo J, Wheeler K, Park C, Kim D, Park S, Kim W, Chung S & Leighton T (2005) Rapid genotypic detection of Bacillus anthracis and the Bacilluscereus group by multiplex real-time PCR melting curve analysis. FEMS Immunol Med Microbiol 43: 301310.
  • Koenig GL (2003) Viability of and plasmid retention in frozen recombinant Escherichia coli over time: a ten-year prospective study. Appl Environ Microbiol 69: 66056609.
  • Kostka JE, Prakash O, Overholt WA, Green SJ, Freyer G, Canion A, Delgardio J, Norton N, Hazen TC & Huettel M (2011) Hydrocarbon-degrading bacteria and the bacterial community response in Gulf of Mexico beach sands impacted by the Deepwater Horizon oil spill. Appl Environ Microbiol 77: 79627974.
  • Krumnow AA, Sorokulova IB, Olsen E, Globa L, Barbaree JM & Vodyanoy VJ (2009) Preservation of bacteria in natural polymers. J Microbiol Methods 78: 189194.
  • Kuppardt A, Chatzinotas A, Breuer U, Meer JR & Harms H (2009) Optimization of preservation conditions of As(III) bioreporterbacteria. Appl Microbiol Biotechnol 82: 785792.
  • Lal R, Pandey G, Sharma P et al. (2010) Biochemistry of microbial degradation of hexachlorocyclohexane and prospects for bioremediation. Microbiol Mol Biol Rev 74: 5880.
  • Lang E & Malik KA (1996) Maintenance of biodegradation capacities of aerobic bacteria during long-term preservation. Biodegradation 7: 6571.
  • Leadbetter JR (2003) Cultivation of recalcitrant microbes: cells are alive, well and revealing their secrets in the 21st century laboratory. Curr Opin Microbiol 6: 274281.
  • Leben C & Sleesman JP (1982) Preservation of plant-pathogenic bacteria on silica gel. Plant Dis 82: 327.
  • Lennon JT & Jones SE (2011) Microbial seed banks: the ecological and evolutionary implications of dormancy. Nat Rev Microbiol 9: 119130.
  • Leslie SB, Israeli E, Lighthart B, Crowe JH & Crowe LM (1995) Trealose and sucrose protect both membranes and proteins in intact bacteria during drying. Appl Environ Microbiol 61: 35923597.
  • Liao CH & Shollenberger LM (2003) Survivability and long term preservation of bacteria in water and phosphate buffered saline. Appl Microbiol 37: 4550.
  • Lovelock JE (1954) The protective action of neutral solutes against haemolysis by freezing and thawing. Biochem J 56: 265270.
  • Marston CK, Hoffmaster AR, Wilson KE, Bragg SL, Plikaytis B, Brachman P, Johnson S, Kaufmann AF & Popovic T (2005) Effects of long-term storage on plasmid stability in Bacillus anthracis. Appl Environ Microbiol 71: 77787780.
  • Mazur P (2004) Principles of cryobiology in. Life in the Frozen State (Fuller BJ, Lane NJ & EE Benson, eds), pp. 365. CRC Press, Boca Raton, FL.
  • Miyamoto-Shinohara Y, Imaizumi T, Sukenobe J, Murakami Y, Kawamura S & Komatsu Y (2000) Survival rate of microbes after freeze-drying and long-term storage. Cryobiology 41: 251255.
  • Morgan CA, Herman N, White PA & Vesey G (2006) Preservation of micro-organisms by drying; a review. J Microbiol Methods 66: 183193.
  • Muller J, Day JG, Harding K, Hepperle D, Lorenz M & Friedl T (2007) Assessing genetic stability of a range of terrestrial microalage after cryopreservation using amplified fragment length polymorphism (AFLP). Am J Bot 94: 799808.
  • Nagai T, Tomioka K, Takeuchi K, Iida M, Kawada M & Sato T (2005) Evaluation of preservation techniques of microorganism resources in the MAFF Genebank. Jpn Agric Res Q 39: 1927.
  • Nakasone KK, Peterson SW & Jong SC (2004) Preservation and distribution of fungal cultures. Biodiversity of Fungi: Inventory and Monitoring Methods (Bills G, Muller GM & Foster MS, eds), pp. 3747. Elsevier, Amsterdam.
  • Nichols D, Lewis K, Orjala J, Mo S, Ortenberg R, O'Connor P, Zhao C, Vouros P, Kaeberlein T & Epstein SS (2008) Short peptide induces an ‘uncultivable’ microorganism to grow in vitro. Appl Environ Microbiol 74: 48894897.
  • OECD (2001) Biological Resource Centers: Underpinning the Future of Life Sciences and Biotechnology. Organization for Economic Co-operation and Development, Directorate for Science, Technology, and Industry, Paris, France.
  • OECD (2007) OECD Best Practices Guidelines for Biological Resource Centers. OECD, Paris. Available at: http://www.oecd.org/dataoecd/7/13/38777417.pdf.
  • Pace NR (2009) Mapping the tree of life: progress and prospects. Microbiol Mol Biol Rev 73: 565576.
  • Palmfeldt J & Hahn-Hagerdal B (2000) Influence of culture pH on survival of Lactobacillus reuteri subjected to freeze-drying. Int J Food Microbiol 55: 235238.
  • Palmfeldt J, Radstrom P & Hahn-Hagerdal B (2003) Optimisation of initial cell concentration enhances freeze-drying tolerance of Pseudomonas chlororaphis. Cryobiology 47: 2129.
  • Patel SM & Pikal MJ (2011) Emerging freeze-drying process development and scale-up issues. AAPS PharmSciTech 12: 372378.
  • Pérez-García A, Mingorance E, Rivera ME, Del Pino D, Romero D, Torés JA & De Vicente A (2006) Long-term preservation of Podosphaera fusca using silica gel. J Phytopathol 154: 190192.
  • Ragimbeau C, Schneider F, Losch S, Even J & Mossong J (2008) Multilocus sequence typing, pulsed-field gel electrophoresis, and fla short variable region typing of clonal complexes of Campylobacter jejuni strains of human, bovine, and poultry origins in Luxembourg. Appl Environ Microbiol 74: 77157722.
  • Ren D, Bedzyk LA, Ye RW, Thomas SM & Wood TK (2004) Stationary-phase quorum-sensing signals affect autoinducer-2 and gene expression in Escherichia coli. Appl Environ Microbiol 70: 20382043.
  • Senni K, Pereira J, Gueniche F, Delbarre-Ladrat C, Sinquin C, Ratiskol J, Godeau G, Fischer A-M, Helley D & Sylvia C-J (2011) Marine polysaccharides: a source of bioactive molecules for cell therapy and tissue engineering. Mar Drugs 9: 16641681.
  • Siaterlis A, Deepika G & Charalampopoulos D (2009) Effect of culture medium and cryoprotectants on the growth and survival of probiotic lactobacilli during freeze drying. Lett Appl Microbiol 48: 295301.
  • Simione FP Jr (1992) Key issues relating to the genetic stability and preservation of cells and cell banks. J Parenter Sci Technol 46: 226232.
  • Singh BK, Richard D, Smith BP & Reay DS (2010) Microorganisms and climate change: terrestrial feedbacks and mitigation options. Nat Rev Microbiol 8: 779790.
  • Smith D (2003) Culture collections over the world. Int Microbiol 6: 95100.
  • Smith D & Ryan M (2012) Implementing best practices and validation of cryopreservation techniques for microorganisms. Sci World J doi:10.1100/2012/805659.
  • Smith D, Ryan J & Stackebrandt E (2008) The ex situ conservation of microorganisms: aiming at a certified quality management. Biotechnology (Doelle HW & DaSilva EJ, eds), Encyclopedia of Life Support Systems (EOLSS), Developed under the Auspices of UNESCO, EOLSS Publisher, Oxford, UK.
  • Stackebrandt E (2010) Diversification and focusing: strategies of microbial culture collections. Trends Microbiol 18: 283287.
  • Stackebrandt E (2011) Towards a strategy to enhance access to microbial diversity. Int J Syst Evol Microbiol 61: 479481.
  • Stahl DA & Wagner M (2006) The knowledge explosion in environmental microbiology offers new opportunities in biotechnology. Curr Opin Biotechnol 17: 227228.
  • Stern S (2004) Biological Resource Centers: Knowledge Hubs for the Life Sciences. Brookings Institution Press, Washington, DC.
  • Stielow JB, Vaas LA, Göker M, Hoffmann P & Klenk HP (2012) Charcoal filter paper improves the viability of cryopreserved filamentous ectomycorrhizal and saprotrophic Basidiomycota and Ascomycota. Mycologia 104: 324330.
  • Streeter J (2003) Effect of trehalose on survival of Bradyrhizobium japonicum during desiccation. J Appl Microbiol 95: 484491.
  • Tindall BJ (2007) Vacuum-drying and cryopreservation of prokaryotes. Cryopreservation and Freeze-Drying Protocols (Day JG & Stacey GN, eds), pp. 7398. Humana Press, Totowa, NJ.
  • Trivedi P, Pandey A & Lok Man SP (2012) bacterial inoculants for field applications under mountain ecosystem: present initiatives and future prospects. Bacteria in Agrobiology: Plant Probiotics (Maheshwari DK, ed), pp. 1544. Springer-Verlag, Berlin.
  • Vartoukian SR, Palmer R & Wade WG (2010) Strategies for culture of ‘unculturable’ bacteria. FEMS Microbiol Lett 309: 17.
  • Ward N, Eisen J, Fraser C & Stackebrandt E (2001) Sequenced strains must be saved from extinction. Nature 414: 148.
  • Winters RD & Winn WC Jr (2010) A simple effective method for bacterial culture storage: a brief technical report. J Bacteriol Virol 40: 99101.
  • Woke B (2007) HOW cryoprotectants work. In Cryonics, Vol. 28: 3 (Chapman J, ed), pp. 37. Alcor Life Extension Foundation, Arizona.
  • Zaidi A, Khan MS, Ahemad M & Oves M (2009) Plant growth promotion by phosphate solubilizing bacteria. Acta Microbiol Immunol Hung 56: 263284.
  • Zengler K, Toledo C, Rappe M, Elkins J, Mathur EJ, Short JM & Keller M (2002) Cultivating the uncultured. P Natl Acad Sci USA 99: 1568115686.