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fml12179-sup-0001-FigS1.pdfapplication/PDF96KFig. S1. A SNP locus in P. lateralis that shows both homozygosity and heterozygosity. Genomic sequence reads from each isolate were aligned against the SMST21 genome assembly (GenBank: ANHO00000000) using BWA. The figure shows a short section of the alignment visualised using IGV.
fml12179-sup-0002-TableS1.pdfapplication/PDF349KTable S1. Conservation of P. ramorum RxLR proteins in Phytophthora lateralis and previously sequenced Phytophthora species. We performed BLAT (Kent, 2002) searches using as queries each of a previously curated catalogue of 309 P. ramorum RxLR sequences (Haas et al., 2009). We searched against previously published genome assemblies of P. ramorum, P. sojae, P. infestans and P. capsici as well as against the four combined P. lateralis assemblies. We counted a protein as conserved if BLAT recovered a hit covering at least 90% of the query sequence with an amino acid sequence identity of at least 90%.

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