SEARCH

SEARCH BY CITATION

References

  • Bergman CM & Quesneville H (2007) Discovering and detecting transposable elements in genome sequences. Brief Bioinform 8: 382392.
  • Besemer J & Borodovsky M (2005) GeneMark: web software for gene finding in prokaryotes, eukaryotes and viruses. Nucleic Acids Res 33: W451W454.
  • Boetzer M, Henkel CV, Jansen HJ, Butler D & Pirovano W (2011) Scaffolding pre-assembled contigs using SSPACE. Bioinformatics 27: 578579.
  • Burge C & Karlin S (1997) Prediction of complete gene structures in human genomic DNA. J Mol Biol 268: 7894.
  • Coordinators NR (2013) Database resources of the National Center for Biotechnology Information. Nucleic Acids Res 41: D8D20.
  • Dean M, Hamon Y & Chimini G (2001) The human ATP-binding cassette (ABC) transporter superfamily. J Lipid Res 42: 10071017.
  • Eckert J (1987) Penicillium digitatum biotypes with reduced sensitivity to imazalil. Phytopathology 77: 1728.
  • Ghosoph JM, Schmidt LS, Margosan DA & Smilanick JL (2007) Imazalil resistance linked to a unique insertion sequence in the PdCYP51 promoter region of Penicillium digitatum. Postharvest Biol Tec 44: 918.
  • Hamamoto H, Hasegawa K, Nakaune R, Lee YJ, Makizumi Y, Akutsu K & Hibi T (2000) Tandem repeat of a transcriptional enhancer upstream of the sterol 14α-demethylase gene (CYP51) in Penicillium digitatum. Appl Environ Microbiol 66: 34213426.
  • Hamamoto H, Nawata O, Hasegawa K, et al. (2001) The Role of the ABC transporter gene PMR1 in demethylation inhibitor resistance in Penicillium digitatum. Pestic Biochem Phys 70: 1926.
  • Kanetis L, Förster H & Adaskaveg JE (2007) Comparative efficacy of the new postharvest fungicides azoxystrobin, fludioxonil, and pyrimethanil for managing citrus green mold. Plant Dis 91: 15021511.
  • Kim Y, Park S-Y, Kim D, Choi J, Lee Y-H, Lee J-H & Choi W (2013) Genome-scale analysis of ABC transporter genes and characterization of the ABCC type transporter genes in Magnaporthe oryzae. Genomics 101: 354361.
  • Kovalchuk A & Driessen A (2010) Phylogenetic analysis of fungal ABC transporters. BMC genomics 11: 177.
  • Livak KJ & Schmittgen TD (2001) Analysis of relative gene expression data using real-time quantitative PCR and the 2− ΔΔCT method. Methods 25: 402408.
  • Luo CX & Schnabel G (2008) The cytochrome P450 lanosterol 14α-demethylase gene is a demethylation inhibitor fungicide resistance determinant in Monilinia fructicola field isolates from Georgia. Appl Environ Microbiol 74: 359366.
  • Ma Z, Proffer TJ, Jacobs JL & Sundin GW (2006) Overexpression of the 14α-demethylase target gene (CYP51) mediates fungicide resistance in Blumeriella jaapii. Appl Environ Microbiol 72: 25812585.
  • Macarisin D, Cohen L, Eick A, Rafael G, Belausov E, Wisniewski M & Droby S (2007) Penicillium digitatum suppresses production of hydrogen peroxide in host tissue during infection of citrus fruit. Phytopathology 97: 14911500.
  • Marcet-Houben M, Ballester A-R, de la Fuente B, Harries E, Marcos JF, González-Candelas L & Gabaldón T (2012) Genome sequence of the necrotrophic fungus Penicillium digitatum, the main postharvest pathogen of citrus. BMC genomics 13: 646.
  • Nakaune R, Hamamoto H, Imada J, Akutsu K & Hibi T (2002) A novel ABC transporter gene, PMR5, is involved in multidrug resistance in the phytopathogenic fungus Penicillium digitatum. Mol Genet Genomics 267: 179185.
  • Paumi CM, Chuk M, Snider J, Stagljar I & Michaelis S (2009) ABC transporters in Saccharomyces cerevisiae and their interactors: new technology advances the biology of the ABCC (MRP) subfamily. Microbiol Mol Biol Rev 73: 577593.
  • Schnabel G & Jones AL (2001) The 14α-demethylase (CYP51A1) gene is overexpressed in Venturia inaequalis strains resistant to myclobutanil. Phytopathology 91: 102110.
  • Stanke M, Steinkamp R, Waack S & Morgenstern B (2004) AUGUSTUS: a web server for gene finding in eukaryotes. Nucleic Acids Res 32: W309W312.
  • Sun X, Li H & Yu D (2011a) Complete mitochondrial genome sequence of the phytopathogenic fungus Penicillium digitatum and comparative analysis of closely related species. FEMS Microbiol Lett 323: 2934.
  • Sun X, Wang J, Feng D, Ma Z & Li H (2011b) PdCYP51B, a new putative sterol 14α-demethylase gene of Penicillium digitatum involved in resistance to imazalil and other fungicides inhibiting ergosterol synthesis. Appl Microbiol Biotechnol 91: 11071119.
  • Sun X, Xu Q, Ruan R, Zhang T, Zhu C & Li H (2013) PdMLE1, a specific and active transposon acts as a promoter and confers Penicillium digitatum with DMI resistance. Environ Microbiol Rep 5: 135142.
  • Tamura K, Peterson D, Peterson N, Stecher G, Nei M & Kumar S (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28: 27312739.
  • Thompson JD, Gibson T & Higgins DG (2002) Multiple sequence alignment using ClustalW and ClustalX. Curr Protoc Bioinformatics, 2.3. 12.3. 22.
  • Wang J, Sun X, Lin L, Zhang T, Ma Z & Li H (2012) PdMfs1, a major facilitator superfamily transporter from Penicillium digitatum, is partially involved in the imazalil-resistance and pathogenicity. Afr J Microbiol Res 6: 95105.
  • Zhu J, Xie Q & Li H (2006) Occurrence of imazalil-resistant biotype of Penicillium digitatum in China and the resistant molecular mechanism. J Zhejiang Univ Sci A 7: 362365.