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References

  • Amann R, Fuchs BM & Behrens S (2001) The identification of microorganisms by fluorescence in situ hybridisation. Curr Opin Biotechnol 12: 231236.
  • Anderson IC, Campbell CD & Prosser JI (2003) Diversity of fungi in organic soils under a moorland – Scots pine (Pinus sylvestris L.) gradient. Environ Microbiol 5: 11211132.
  • Binh CTT, Heuer H, Kaupenjohann M & Smalla K (2009) Diverse aadA gene cassettes on class 1 integrons introduced into soil via spread manure. Res Microbiol 160: 427433.
  • Chiou C & Jones AL (1993) Nucleotide sequence analysis of a transposon (Tn5393) carrying streptomycin resistance genes in Erwinia amylovora and other gram-negative bacteria. J Bacteriol 175: 732740.
  • Chopra I & Roberts M (2001) Tetracycline antibiotics: mode of action, applications, molecular biology, and epidemiology of bacterial resistance. Microbiol Mol Biol Rev 65: 232260.
  • Datta N (1962) Transmissible drug resistance in an epidemic strain of Salmonella typhimurium. J Hyg (Lond) 60: 301310.
  • Doumith M, Dhanji H, Ellington MJ, Hawkey P & Woodford N (2012) Characterization of plasmids encoding extended-spectrum β-lactamases and their addiction systems circulating among Escherichia coli clinical isolates in the UK. J Antimicrob Chemother 67: 878885.
  • Duffy B, Schärer HJ, Bünter M, Klay A & Holliger E (2005) Regulatory measures against Erwinia amylovora in Switzerland. EPPO Bull 35: 239244.
  • Duffy B, Schoch B, Vogelsanger J, Holliger E & Moltmann E (2008) Fire blight forecasting model optimization in a user-friendly online interface. Acta Hortic 803: 7782.
  • Duffy B, Walsh F, Pelludat C, Holliger E, Oulevet C & Widmer F (2011) Environmental monitoring of antibiotic resistance and impact of streptomycin use on orchard bacterial communities. Acta Hortic 896: 483488.
  • Finken M, Kirschner P, Meier A, Wrede A & Böttger EC (1993) Molecular basis of streptomycin resistance in Mycobacterium tuberculosis: alterations of the ribosomal protein S12 gene and point mutations within a functional 16S ribosomal RNA pseudoknot. Mol Microbiol 9: 12391246.
  • Gomes NCM, Fagbola O, Costa R, Rumjanek NG, Buchner A, Mendona-Hagler L & Smalla K (2003) Dynamics of fungal communities in bulk and maize rhizosphere soil in the tropics. Appl Environ Microbiol 69: 37583766.
  • Goodman RN (1961) Chemical residues and additives in foods of plant origin. Am J Clin Nut 9: 269276.
  • Hardwick SA, Stokes HW, Findlay S, Taylor M & Gillings MR (2008) Quantification of class 1 integron abundance in natural environments using real-time quantitative PCR. FEMS Microbiol Lett 278: 207212.
  • Johnson KB (2000) Fire blight of pear and apple. Plant Health Inspect 072601, available from http://www.apsnet.org/edcenter/intropp/lessons/prokaryotes/Pages/FireBlight.aspx.
  • Jones AL & McGhee GC (2001) Plasmids pEA29 and pEa34 in Erwinia amylovora are unrelated. Microbiology 147: 26322633.
  • Karczmarczyk M, Abbott Y, Walsh C, Leonard N & Fanning S (2011) Characterization of multidrug-resistant Escherichia coli isolates from animals presenting at a university veterinary hospital. Appl Environ Microbiol 77: 71047112.
  • Livak KJ & Schmittgen TD (2001) Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) method. Methods 25: 402408.
  • McGhee GC & Jones AL (2000) Complete nucleotide sequence of ubiquitous plasmid pEA29 from Erwinia amylovora strain Ea88: gene organization and intraspecies variation. Appl Environ Microbiol 66: 48974907.
  • McManus PS, Stockwell VO, Sundin GW & Jones AL (2002) Antibiotic use in plant agriculture. Annu Rev Phytopathol 40: 443465.
  • Milling A, Smalla K, Maidl FX, Schloter M & Munch JC (2004) Effects of transgenic potatoes with an altered starch composition on the diversity of soil and rhizosphere bacteria and fungi. Plant Soil 266: 2339.
  • Mulvey MR, Finley R, Allen V et al. (2013) Emergence of multidrug-resistant Salmonella enterica serotype 4,[5],12:i:- involving human cases in Canada: results from the Canadian Integrated Program on Antimicrobial Resistance Surveillance (CIPARS), 2003-10. J Antimicrob Chemother 68: 19821986.
  • Nigro SJ & Hall RM (2012) Antibiotic resistance islands in A320 (RUH134), the reference strain for Acinetobacter baumannii global clone 2. J Antimicrob Chemother 67: 335338.
  • Norelli JL, Jones AL & Aldwinkle HS (2003) Fire blight management in the twenty-first century: using new technologies that enhance resistance in apple. Plant Dis 87: 756765.
  • Pissowotzki K, Mansouri K & Piepersberg W (1991) Genetics of streptomycin production in Streptomyces griseus: molecular structure and putative function of genes strELMB2N. Mol Gen Genet 231: 113123.
  • Popowska M, Rzeczycka M, Miernik A, Krawczyk-Balska A, Walsh F & Duffy B (2012) Influence of soil use on prevalence of tetracycline, streptomycin, and erythromycin resistance and associated resistance genes. Antimicrob Agents Chemother 56: 14341443.
  • Roberts MC (2005) Update on acquired tetracycline resistance genes. FEMS Microbiol Lett 245: 195203.
  • Rodríguez C, Lang L, Wang A, Altendorf K, Garcia F & Lipski A (2006) Lettuce for human consumption collected in Costa Rica contains complex communities of culturableoxytetracycline- and gentamicin-resistant bacteria. Appl Environ Microbiol 72: 58705876.
  • Rodríguez-Sánchez C, Alterndorf K, Smalla K & Lipski A (2007) Spraying of oxytetracycline and gentamicin onto field-grown coriander did not affect the abundance of resistant bacteria, resistance genes, and broad host range plasmids detected in tropical soil bacteria. Biol Fertil Soils 44: 589596.
  • Saule M, Samuelsen Ø, Dumpis U, Sundsfjord A, Karlsone A, Balode A, Miklasevics E & Karah N (2013) Dissemination of a carbapenem-resistant Acinetobacter baumannii strain belonging to international clone II/sequence type 2 and harboring a novel AbaR4-like resistance island in Latvia. Antimicrob Agents Chemother 57: 10691072.
  • Shade A, McManus PS & Handelsman J (2013) Unexpected diversity during community succession in the apple flower microbiome. MBio 26: e00602e00612.
  • Srinivasan V, Nam HM, Sawant AA, Headrick SI, Nguyen LT & Oliver SP (2008) Distribution of tetracycline and streptomycin resistance genes and class 1 integrons in Enterobacteriaceae isolated from dairy and nondairy farm soils. Microb Ecol 55: 184193.
  • Staley JT & Konopka A (1985) Measurement of in situ activities of nonphotosynthetic microorganisms in aquatic and terrestrial habitats. Annu Rev Microbiol 39: 321346.
  • Stockwell VO & Duffy B (2012) Use of antibiotics in plant agriculture. Rev Sci Tech 31: 199210.
  • Sundin GW, Monks DE & Bender CL (1995) Distribution of the streptomycin resistance transposon Tn5393 among phylloplane and soil bacteria from managed agricultural habitats. Can J Microbiol 41: 792799.
  • Tadesse DA, Zhao S, Tong E, Ayers S, Singh A, Bartholomew MJ & McDermott PF (2012) Antimicrobial drug resistance in Escherichia coli from humans and food animals, United States, 1950–2002. Emerg Infect Dis 18: 741749.
  • Tolba S, Egan S, Kallifidas D & Wellington EM (2002) Distribution of streptomycin resistance and biosynthesis genes in streptomycetes recovered from different soil sites. FEMS Microbiol Ecol 42: 269276.
  • van Overbeek LS, Wellington EM, Egan S, Smalla K, Heuer H, Collard JM, Guillaume G, Karagouni AD, Nikolakopoulou TL & van Elsas JD (2002) Prevalence of streptomycin-resistance genes in bacterial populations in European habitats. FEMS Microbiol Ecol 42: 277288.
  • Vidaver AK (2002) Uses of antibiotics in plant agriculture. Clin Infect Dis 34: S107S110.
  • Vilacoba E, Almuzara M, Gulone L, Traglia GM, Figueroa SA, Sly G, Fernández A, Centrón D & Ramírez MS (2013) Emergence and spread of plasmid-borne tet(B):ISCR2 in minocycline-resistant Acinetobacter baumannii isolates. Antimicrob Agents Chemother 57: 651654.
  • Walsh F (2013) Investigating antibiotic resistance in non-clinical environments. Front Microbiol 4: 19.
  • Walsh F & Duffy B (2013) The culturable soil antibiotic resistome: a community of multi-drug resistant bacteria. PLoS One 8: e65567.
  • Walsh F, Ingenfeld A, Zampicolli M, Hilber-Bodmer M, Frey JE & Duffy B (2011) Real-time PCR methods for quantitative monitoring of streptomycin and tetracycline resistance genes in agricultural ecosystems. J Microbiol Methods 86: 150155.
  • Wibberg D, Szczepanowski R, Eikmeyer F, Pühler A & Schlüter A (2013) The IncF plasmid pRSB225 isolated from a municipal wastewater treatment plant's on-site pre flooder combining antibiotic resistance and putative virulence functions is highly related to virulence plasmids identified in pathogenic E. coli isolates. Plasmid 69: 127137.
  • Yashiro E & McManus PS (2012) Effect of streptomycin treatment on bacterial community structure in the apple phyllosphere. PLoS One 7: e37131.