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  • Behr, J., Gänzle, M.G., and Vogel, R.F. (2006) Characterization of a highly hop-resistant Lactobacillus brevis strain lacking hop transport. Appl Environ Microbiol 72: 64836492.
  • Behr, J., Gänzle, M.G., and Vogel, R.F. (2007) Proteomic approach for characterization of hop-inducible proteins in Lactobacillus brevis. Appl Environ Microbiol 73: 33003306.
  • Belenguer, A., Duncan, S.H., Calder, A.G., Holtrop, G., Louis, P., Lobley, G.E., and Flint, H.J. (2006) Two routes of metabolic cross-feeding between Bifidobacterium adolescentis and butyrate-producing anaerobes from the human gut. Appl Environ Microbiol 72: 35933599.
  • Berry, D., Schwab, C., Milinovich, G., Reichert, J., Ben Mahfoudh, K., Decker, T., et al. (2012) Phylotype-level 16S rRNA analysis reveals new bacterial indicators of health state in acute murine colitis. ISME J 6: 20912106.
  • Boot, H.J., Kolen, C.P., and Pouwels, P.H. (1995) Identification, cloning, and nucleotide sequence of a silent S-layer protein gene of Lactobacillus acidophilus ATCC 4356 which has extensive similarity with the S-layer protein gene of this species. J Bacteriol 177: 72227230.
  • Boyd, D.A., Cvitkovitch, D.G., Bleiweis, A.S., Kiriukhin, M.Y., Debabov, D.V., Neuhaus, F.C., et al. (2000) Defects in D-alanyl-lipoteichoic acid synthesis in Streptococcus mutans results in acid sensitivity. J Bacteriol 182: 60556065.
  • Bron, P.A., Grangette, C., Mercenier, A., de Vos, W.M., and Kleerebezem, M. (2004) Identification of Lactobacillus plantarum genes that are induced in the gastrointestinal tract of mice. J Bacteriol 186: 57215729.
  • Brown, J.L., Ross, T., McMeekin, T.A., and Nichols, P.D. (1997) Acid habituation of Escherichia coli and the potential role of cyclopropane fatty acids in low pH tolerance. Int J Food Microbiol 37: 163173.
  • Buhnik-Rosenblau, K., Matsko-Efimov, V., Jung, M., Shin, H., Danin-Poleg, Y., and Kashi, Y. (2012) Indication for co-evolution of Lactobacillus johnsonii with its hosts. BMC Microbiol 12: 149.
  • Canchaya, C., Claesson, M.J., Fitzgerald, G.F., van Sinderen, D., and O'Toole, P.W. (2006) Diversity of the genus Lactobacillus revealed by comparative genomics of five species. Microbiology 152: 31853196.
  • Claesson, M.J., van Sinderen, D., and O'Toole, P.W. (2007) The genus Lactobacillus: a genomic basis for understanding its diversity. FEMS Microbiol Lett 269: 2228.
  • Denou, E., Berger, B., Barretto, C., Panoff, J.-M., Arigoni, F., and Brüssow, H. (2007) Gene expression of commensal Lactobacillus johnsonii strain NCC533 during in vitro growth and in the murine gut. J Bacteriol 22: 81098119.
  • Denou, E., Pridmore, R.D., Berger, B., Panoff, J.-M., Arigoni, F., and Brüssow, H. (2008) Identification of genes associated with long-gut persistence phenotype of the probiotic Lactobacillus johnsonii strain NCC533 using a combination of genomics and transcriptome analysis. J Bacteriol 190: 31613168.
  • Duncan, S.H., Louis, P., and Flint, H.J. (2004) Lactate-utilizing bacteria, isolated from human feces, that produce butyrate as major fermentation product. Appl Environ Microbiol 70: 58105817.
  • Embley, T.M., Faquir, N., Bossart, W., and Collins, M.D. (1989) Lactobacillus vaginalis sp. nov. from the human vagina. Int J Syst Bacteriol 39: 368370.
  • Felis, G.E., and Dellaglio, F. (2007) Taxonomy of lactobacilli and bifidobacteria. Curr Issues Intest Microbiol 8: 4461.
  • Frese, S.A., Benson, S.K., Tannock, G.W., Loach, D.M., Kim, J., Zhang, M., et al. (2011) The evolution of host specialization of the vertebrate gut symbiont Lactobacillus reuteri. PLoS Genet 7: e1001314.
  • Fuller, R., Barrow, P.A., and Brooker, B.E. (1978) Bacteria associated with the gastric epithelium of neonatal pigs. Appl Environ Microbiol 35: 582591.
  • Gänzle, M., and Schwab, C. (2009b) Exploitation of the metabolic potential of lactic acid bacteria for improved quality of gluten-free bread. In The Science of Gluten-Free Foods and Beverages. Arendt, E. , and Dal Bello, F. (eds). St. Paul, MN, USA: AACC Press, pp. 99111.
  • Gänzle, M.G., and Follador, R. (2012) Metabolism of oligosaccharides and starch in lactobacilli: a review. Front Microbiol 3: 340.
  • Gänzle, M.G., and Schwab, C. (2009a) Ecology of exopolysaccharide formation by lactic acid bacteria: sucrose utilisation, stress tolerance, and biofilm formation. In Bacterial Polysaccharides: Current Innovations and Future Trends. Ullrich, M. (ed.). Norfolk, UK: Caister Academic Press, pp. 263278.
  • Gänzle, M.G., Vermeulen, N., and Vogel, R.F. (2007) Carbohydrate, peptide and lipid metabolism of lactic acid bacteria in sourdough. Food Microbiol 24: 128138.
  • Guinane, C.M., Kent, R.M., Norberg, S., Hill, C., Fitzgerald, G.F., Stanton, C., et al. (2011) Host specific diversity in Lactobacillus johnsonii as evidenced by a major chromosomal inversion and phage resistance mechanism. PLoS ONE 6: e18740.
  • Hammer, Ø., Harper, D.A.T., and Ryan, P.D. (2001) PAST: paleontological statistics software package for education and data analysis. Palaeontol Electron 4: 9.
  • Helbling, D.E., Ackermann, M., Fenner, K., Kohler, H.-P.E., and Johnson, D.R. (2012) The activity level of a microbial community function can be predicted from its metatranscriptome. ISME J 6: 902904.
  • Jänsch, A., Korakli, M., Vogel, R.F., and Gänzle, M.G. (2007) Glutathione reductase from Lactobacillus sanfranciscensis DSM20451T: contribution to oxygen tolerance and thiol exchange reactions in wheat sourdough. Appl Environ Microbiol 73: 44694476.
  • Kristian, S.A., Datta, V., Weidenmaier, C., Kansal, R., Fedtke, I., Peschel, A., et al. (2005) D-alanylation of teichoic acids promotes group A Streptococcus antimicrobial peptide resistance, neutrophil survival, and epithelial cell invasion. J Bacteriol 187: 67196725.
  • Lanzén, A., Jørgensen, S.L., Huson, D.H., Gorfer, M., Grindhaug, S.H., Jonassen, I., et al. (2012) CREST – Classification Resources for Environmental Sequence Tags. PLoS ONE 7: e49334.
  • Louis, P., and Flint, H.J. (2009) Diversity, metabolism and microbial ecology of butyrate-producing bacteria from the human large intestine. FEMS Microbiol Lett 294: 18.
  • Magoč, T., and Salzberg, S.L. (2011) FLASH: fast length adjustment of short reads to improve genome assemblies. Bioinformatics 27: 29572963.
  • Marco, M.L., Bongers, R.S., de Vos, W.M., and Kleerebezem, M. (2007) Spatial and temporal expression of Lactobacillus plantarum genes in the gastrointestinal tract of mice. Appl Environ Microbiol 73: 124132.
  • Marco, M.L., Peters, T.H.F., Bongers, R.S., Molenaar, D., van Hemert, S., Sonnenburg, J.L., et al. (2009) Lifestyle of Lactobacillus plantarum in the mouse caecum. Environ Microbiol 11: 27472757.
  • Mitra, S., Stärk, M., and Huson, D.H. (2011) Analysis of 16S rRNA environmental sequences using MEGAN. BMC Genomics 12: S17.
  • Odom, J.M., and Singleton, R., Jr (1993) The Sulfate-Reducing Bacteria: Contemporary Perspectives. New York, USA: Springer-Verlag.
  • Oh, P.L., Benson, A.K., Peterson, D.A., Patil, P.B., Moriyama, E.N., Roos, S., et al. (2010) Diversification of the gut symbiont Lactobacillus reuteri as a result of host-driven evolution. ISME J 4: 377387.
  • Pophaly, S.D., Singh, R., Pophaly, S.D., Kaushik, J.K., and Tomar, S.K. (2012) Current status and emerging role of glutathione in food grade lactic acid bacteria. Microb Cell Fact 11: 114.
  • Pridmore, R.D., Berger, B., Desiere, F., Vilanova, D., Barretto, C., Pittet, A.-C., et al. (2004) The genome sequence of the probiotic intestinal bacterium Lactobacillus johnsonii NCC 533. PNAS 101: 25122517.
  • Punta, M., Coggill, P.C., Eberhardt, R.Y., Mistry, J., Tate, J., Boursnell, C., et al. (2012) The Pfam protein families database. Nucleic Acids Res 40: D290D301.
  • Quast, C., Pruesse, E., Yilmaz, P., Gerken, J., Schweer, T., Yarza, P., et al. (2013) The SILVA ribosomal RNA gene database project: improved data processing and web-based tools. Nucleic Acids Res 41: D590D596.
  • Rollan, G., Lorca, G.L., and Font de Valdez, G. (2003) Arginine catabolism and acid tolerance response in Lactobacillus reuteri isolated from sourdough. Food Microbiol 20: 313319.
  • Roos, S., and Jonsson, H. (2002) A high-molecular-mass cell-surface protein from Lactobacillus reuteri 1063 adheres to mucus components. Microbiology 148: 433442.
  • Sachs, G., Weeks, D.L., Melchers, K., and Scott, D.R. (2003) The gastric biology of Heliobacter pylori. Annu Rev Physiol 65: 349369.
  • Savage, D.C. (1972) Associations and physiological interactions of indigenous microorganisms and gastrointestinal epithelia. Am J Clin Nutr 25: 13721379.
  • Schwab, C., Berry, D., Rauch, I., Rennisch, I., Ramesmayer, J., Hainzl, E., et al. (2014) Longitudinal study of murine microbiota activity and interactions with the host during acute inflammation and recovery. ISME J. [epub ahead of print].
  • Sims, I.M., Frese, S.A., Walter, J., Loach, D., Wilson, M., Appleyard, K., et al. (2011) Structure and functions of exopolysaccharide produced by gut commensal Lactobacillus reuteri 100-23. ISME J 5: 11151124.
  • Su, M.S.-W., Schlicht, S., and Gänzle, M.G. (2011) Contribution of glutamate decarboxylase in Lactobacillus reuteri to acid resistance and persistence in sourdough. Microb Cell Fact 10: S8.
  • Su, M.S.-W., Phaik, L.O., Walter, J., and Gänzle, M.G. (2012) Phylogenetic, genetic, and physiological analysis of sourdough isolates of Lactobacillus reuteri: food fermenting strains of intestinal origin. Appl Environ Microbiol 78: 67776780.
  • Tannock, G.W., Crichton, C., Welling, G.W., Koopman, J.P., and Midtvedt, T. (1988) Reconstitution of the gastrointestinal microflora of lactobacillus-free mice. Appl Environ Microbiol 54: 29712975.
  • Tannock, G.W., Wilson, C.M., Loach, D., Cook, G.M., Eason, J., O'Toole, P.W., et al. (2012) Resource partitioning in relation to cohabitation of Lactobacillus species in the mouse forestomach. ISME J 6: 927938.
  • Tieking, M., Korakli, M., Ehrmann, M.A., Gänzle, M.G., and Vogel, R.F. (2003) In situ production of exopolysacchardes during sourdough fermentation by cereal and intestinal isolates of lactic acid bacteria. Appl Environ Microbiol 69: 945952.
  • Urich, T., Lanzén, A., Qi, J., Huson, D.H., Schleper, C., and Schuster, S.C. (2008) Simultaneous assessment of soil microbial community structure and function through analysis of the meta-transcriptome. PLoS ONE 3: e2527.
  • Vogel, R.F., Böcker, G., Stolz, P., Ehrmann, M., Fanta, D., Ludwig, W., et al. (1994) Identification of lactobacilli from sourdough and description of Lactobacillus pontis sp. nov. Int J Syst Bacteriol 44: 223229.
  • Walter, J. (2008) Ecological role of lactobacilli in the gastrointestinal tract: implications for fundamental and biomedical research. Appl Environ Microbiol 74: 49854996.
  • Walter, J., Britton, R.A., and Roos, S. (2011) Host-microbial symbiosis in the vertebrate gastrointestinal tract and the Lactobacillus reuteri paradigm. PNAS 108: 46454652.
  • Walter, J., Schwab, C., Loach, D.M., Ganzle, M.G., and Tannock, G.W. (2008) Glucosyltransferase A (GtfA) and inulosucrase (Inu) of Lactobacillus reuteri TMW1.106 contribute to cell aggregation, in vitro biofilm formation, and colonization of the mouse gastrointestinal tract. Microbiology 154: 7280.
  • Walter, J., Chagnaud, P., Tannock, G.W., Loach, D.M., Dal Bello, F., Jenkinson, H.F., et al. (2005) A high-molecular-mass surface protein (Lsp) and methionine sulfoxide reductase B (MsrB) contribute to the ecological performance of Lactobacillus reuteri in the murine gut. Appl Environ Microbiol 71: 979986.
  • Walter, J., Loach, D.M., Alqumber, M., Rockel, C., Hermann, C., Pfitzenmaier, M., et al. (2007) D-alanyl ester depletion of teichoic acids in Lactobacillus reuteri 100-23 results in impaired colonization of the mouse gastrointestinal tract. Environ Microbiol 9: 17501760.
  • Wang, L.T., Kuo, H.P., Wu, Y.C., Tai, C.J., and Lee, F.L. (2009) Lactobacillus taiwanensis sp. nov., isolated from silage. Int J Syst Evol Microbiol 59: 20642068.
  • Yuki, N., Shimazaki, T., Kushiro, A., Watanabe, K., Uchida, K., Yuyama, T., et al. (2000) Colonization of the stratified squamous epithelium of the nonsecreting area of horse stomach by lactobacilli. Appl Environ Microbiol 66: 50305034.