SEARCH

SEARCH BY CITATION

References

  • AmphibiaWeb (2012) Information on amphibian biology and conservation [web application]. AmphibiaWeb, Berkeley, California. Available: http://amphibiaweb.org/. (Accessed 23 September 2012).
  • Armstrong KF, Ball SL (2005) DNA barcodes for biosecurity: invasive species identification. Philosophical Transactions of the Royal Society B: Biological Sciences, 360, 18131823.
  • Babik W, Szymura JM, Rafinski J (2003) Nuclear markers, mitochondrial DNA, and male secondary sexual traits variation in a newt hybrid zone (Triturus vulgaris x T. montandoni). Molecular Ecology, 12, 19131930.
  • Baker CS, Palumbi SR (1994) Which whales are hunted? A molecular genetic approach to monitoring whaling. Science, 265, 15381539.
  • Begerow D, Nilsson H, Unterseher M, Maier W (2010) Current state and perspectives of fungal DNA barcoding and rapid identification procedures. Applied Microbiology and Biotechnology, 87, 99108.
  • Brown J, Twomey E (2009) Complicated histories: three new species of poison frogs of the genus Ameerega (Anura: Dendrobatidae) from north-central Peru. Zootaxa, 2049, 138.
  • Carbayo F, Marques AC (2011) The costs of describing the entire animal kingdom. Trends in Ecology & Evolution, 26, 154155.
  • Carpenter AI, Robson O, Rowcliffe JM, Watkinson AR (2005) The impacts of international and national governance changes on a traded resource: a case study of Madagascar and its chameleon trade. Biological Conservation, 123, 279287.
  • Castañeda MdR, de Queiroz K (2011) Phylogenetic relationships of the Dactyloa clade of Anolis lizards based on nuclear and mitochondrial DNA sequence data. Molecular Phylogenetics and Evolution, 61, 784800.
  • Che J, Chen HM, Jin JQ et al. (2012) Universal COI primers for DNA barcoding amphibians. Molecular Ecology Resources, 12, 247258.
  • Crawford AJ, Lips KR, Bermingham E (2010) Epidemic disease decimates amphibian abundance, species diversity, and evolutionary history in the highlands of central Panama. Proceedings of the National Academy of Sciences, USA, 107, 1377713782.
  • Crawford AJ, Alonso R, Jaramillo CA, Sucre S, Ibáñez R (2011) DNA barcoding identifies a third invasive species of Eleutherodactylus (Anura: Eleutherodactylidae) in Panama City, Panama. Zootaxa, 2890, 6567.
  • Crawford AJ, Cruz C, Griffith E et al. (2013) DNA barcoding applied to ex situ tropical amphibian conservation program reveals cryptic diversity in captive populations. Molecular Ecology Resources, in press.
  • Daugherty CH, Cree A, Hay JM, Thompson MB (1990) Neglected taxonomy and continuing extinctions of tuatara (Sphenodon). Nature, 347, 177179.
  • van Dijk PP, Stuart BL, Rhodin AGJ (eds.) (2000) Asian Turtle Trade. Proceedings of a Workshop on Conservation and Trade of Freshwater Turtles and Tortoises in Asia. Chelonian Research Monographs, 2, 1164.
  • Ficetola GF, Miaud C, Pompanon F, Taberlet P (2008) Species detection using environmental DNA from water samples. Biology Letters, 4, 423425.
  • Folmer O, Black M, Hoeh W, Lutz R, Vrijenhoek R (1994) DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Molecular Marine Biology and Biotechnology, 3, 294299.
  • Fouquet A, Gilles A, Vences M et al. (2007) Underestimation of species richness in Neotropical frogs revealed by mtDNA analyses. PLoS ONE, 2, e1109.
  • Francis CM, Borisenko AV, Ivanova NV et al. (2010) The role of DNA barcodes in understanding and conservation of mammal diversity in southeast Asia. PLoS ONE, 5, e12575.
  • Fritz U, Havaš P (2007) Checklist of chelonians of the world. Vertebrate Zoology, 57, 149368.
  • Funk WC, Caminer M, Ron SR (2011) High levels of cryptic species diversity uncovered in Amazonian frogs. Proceedings of the Royal Society B: Biological Sciences, 279, 18061814.
  • Glaw F, Köhler J (1998) Amphibian species diversity exceeds that of mammals. Herpetological Review, 29, 1112.
  • Goebel AM, Donnelly JM, Atz ME (1999) PCR primers and amplification methods for 12S ribosomal DNA, the control region, cytochrome oxidase I, and cytochrome b in bufonids and other frogs, and an overview of PCR primers which have amplified DNA in amphibians successfully. Molecular Phylogenetics and Evolution, 11, 163199.
  • Goldberg CS, Pilliod DS, Arkle RS, Waits LP (2011) Molecular detection of vertebrates in stream water: a demonstration using Rocky Mountain tailed frogs and Idaho giant salamanders. PLoS ONE, 6, e22746.
  • Handy SM, Deeds JR, Ivanova NV et al. (2011) A single laboratory validated method for the generation of DNA barcodes for the identification of fish for regulatory compliance. Journal of AOAC International, 94, 201210.
  • Hanken J (1999) Why are there so many new amphibian species when amphibians are declining? Trends in Ecology & Evolution, 14, 78.
  • Haussler D, O'Brien SJ, Ryder OA et al. (2009) A proposal to obtain whole-genome sequence for 10000 vertebrate species. Journal of Heredity, 100, 659674.
  • Hauswaldt JS, Ludewig A-K, Vences M, Pröhl H (2011) Widespread co-occurrence of divergent mitochondrial haplotype lineages in a Central American species of poison frog (Oophaga pumilio). Journal of Biogeography, 38, 711726.
  • Hawkins MA, Sites JW Jr, Noonan BP (2007) Dendropsophus minutus (Anura: Hylidae) of the Guiana Shield: using DNA barcodes to assess identity and diversity. Zootaxa, 1540, 6167.
  • Hebert PDN, Cywinska A, Ball SL, de Waard JR (2003) Biological identifications through DNA barcodes. Proceedings of the Royal Society B: Biological Sciences, 270, 313321.
  • Hebert PDN, Penton EH, Burns JM, Janzen DH, Hallwachs W (2004) Ten species in one: DNA barcoding reveals cryptic species in the neotropical skipper butterfly Astraptes fulgerator. Proceedings of the National Academy of Sciences, USA, 101, 1481214817.
  • Hoffmann M, Hilton-Taylor C, Angulo A et al. (2010) The impact of conservation on the status of the World's vertebrates. Science, 330, 15031509.
  • Jansen M, Bloch R, Schulze A, Pfenninger M (2011) Integrative inventory of Bolivia's lowland anurans reveals hidden diversity. Zoologica Scripta, 40, 567583.
  • Kerr KCR, Lijtmaer DA, Barreira AS, Hebert PDN, Tubaro PL (2009) Probing evolutionary patterns in Neotropical birds through DNA barcodes. PLoS ONE, 4, e4379.
  • Kindler C, Branch WR, Hofmeyr MD et al. (2012) Molecular phylogeny of African hinge-back tortoises (Kinixys): implications for phylogeography and taxonomy (Testudines: Testudinidae). Journal of Zoological Systematics and Evolutionary Research, 50, 192201.
  • Köhler J, Vieites DR, Bonett RM et al. (2005) New amphibians and global conservation: a boost in species discoveries in a highly endangered vertebrate group. BioScience, 55, 693696.
  • May RM (1990) Taxonomy as destiny. Nature, 347, 129130.
  • Meyer CP, Geller JB, Paulay G (2005) Fine scale endemism on coral reefs: archipelagic differentiation in turbinid gastropods. Evolution, 59, 113125.
  • Mohneke M, Onadeko AB, Rödel M-O (2009) Exploitation of frogs – a review with a focus on West Africa. Salamandra, 45, 193202.
  • Murphy RW, Berry KH, Edwards T et al. (2011) The dazed and confused identity of Agassiz's land tortoise, Gopherus agassizii, the description of a new species, and its consequences for conservation. ZooKeys, 113, 3971.
  • Nagy ZT, Sonet G, Glaw F, Vences M (2012) First large-scale DNA barcoding assessment of reptiles in the biodiversity hotspot of Madagascar, based on newly designed COI primers. PLoS ONE, 7, e34506.
  • Naro-Maciel E, Reid B, Fitzsimmons NN et al. (2010) DNA barcodes for globally threatened marine turtles: a registry approach to documenting biodiversity. Molecular Ecology Resources, 10, 252263.
  • Neigel J, Domingo A, Stake J (2007) DNA barcoding as a tool for coral reef conservation. Coral Reefs, 26, 487499.
  • Nijman V, Shepherd CR (2011) The role of Thailand in the international trade in live CITES-listed reptiles and amphibians. PLoS ONE, 6, e17825.
  • Oliver P, Doughty P, Hutchinson MN, Lee MSY, Adams A (2009) The taxonomic impediment in vertebrates: DNA sequence, allozyme and chromosomal data double estimates of species diversity in a lineage of Australian lizards (Diplodactylus, Gekkota). Proceedings of the Royal Society B: Biological Sciences, 276, 20012007.
  • Padial JM, De la Riva I (2007) Integrative taxonomists should use and produce DNA barcodes. Zootaxa, 1586, 6768.
  • Padial J, Miralles A, De la Riva I, Vences M (2010) The integrative future of taxonomy. Frontiers in Zoology, 7, 16.
  • Puillandre N, Bouchet P, Boisselier-Dubayle MC et al. (2012) New taxonomy and old collections: integrating DNA barcoding into the collection curation process. Molecular Ecology Resources, 12, 396402.
  • Ratnasingham S, Hebert PDN (2007) BoLD: the barcode of life data system. Molecular Ecology Notes, 7, 355364.(http://www.barcodinglife.org)
  • Shimada T, Matsui M, Yambun P, Lakim M, Mohamed M (2008) Detection of two cryptic taxa in Meristogenys amoropalamus (Amphibia, Ranidae) through nuclear and mitochondrial DNA analyses. Zootaxa, 1843, 2434.
  • Sinervo B, Méndez de la Cruz FR, Miles DB et al. (2010) Erosion of lizard diversity by climate change and altered thermal niches. Science, 328, 894899.
  • Smith AM, Poyarkov N, Hebert PDN (2008) CO1 DNA barcoding amphibians: take the chance, meet the challenge. Molecular Ecology Resources, 8, 235246.
  • Spinks RQ, Thomson RC, Zang YP et al. (2012) Species boundaries and phylogenetic relationships in the critically endangered Asian box turtle genus Cuora. Molecular Phylogenetics and Evolution, 63, 656667.
  • Steinke D, Zemlak TS, Hebert PDN (2009) Barcoding Nemo: DNA-based identifications for the ornamental fish trade. PLoS ONE, 4, e6300.
  • Strauß A, Reeve E, Randrianiaina RD et al. (2010) The world's richest tadpole communities show functional redundancy and low functional diversity: ecological data on Madagascar's stream-dwelling amphibian larvae. BMC Ecology, 10, e12.
  • Stuart BL, Parham JF (2007) Recent hybrid origin of three rare Chinese turtles. Conservation Genetics, 8, 169175.
  • Thomsen PF, Kielgast J, Iversen LL et al. (2012) Monitoring endangered freshwater biodiversity using environmental DNA. Molecular Ecology, 21, 25652573.
  • Uetz P (2010) The original descriptions of reptiles. Zootaxa, 2334, 5968.
  • Uetz P, Goll J, Hallermann J (2012) The reptile database [web application]. http://www.reptile-database.org. Accessed 23 September 2012.
  • Vargas SM, Araújo FCF, Santos FR (2009) DNA barcoding of Brazilian sea turtles (Testudines). Genetics and Molecular Biology, 32, 608612.
  • Vargas-Ramírez M, Vences M, Branch WR et al. (2010) Deep genealogical lineages in the widely distributed African helmeted terrapin: evidence from mitochondrial and nuclear DNA (Testudines: Pelomedusidae: Pelomedusa subrufa). Molecular Phylogenetics and Evolution, 56, 428440.
  • Vences M, Thomas M, Bonett RM, Vieites DR (2005) Deciphering amphibian diversity through DNA barcoding: chances and challenges. Philosophical Transactions of the Royal Society B: Biological Sciences, 360, 18591868.
  • Vences M, Nagy ZT, Sonet G, Verheyen E (2012) DNA barcoding amphibians and reptiles. In: DNA Barcodes: Methods and Protocols (eds Kress WJ & Erickson DL), pp. 79107. Methods in Molecular Biology, 858. Springer, Berlin, Germany.
  • Vernooy R, Haribabu E, Muller MR et al. (2010) Barcoding life to conserve biological diversity: Beyond the taxonomic imperative. PLoS Biology, 8, e1000417.
  • Vieites DR, Wollenberg KC, Andreone F et al. (2009) Vast underestimation of Madagascar's biodiversity evidenced by an integrative amphibian inventory. Proceedings of the National Academy of Sciences, 106, 82678272.
  • Wheeler QD, Knapp S, Stevenson DW et al. (2012) Mapping the biosphere: exploring species to understand the origin, organization and sustainability of biodiversity. Systematics and Biodiversity, 10, 120.
  • Wong PBY, Wiley EO, Johnson WE et al. (2012) Tissue sampling methods and standards for vertebrate genomics. GigaScience, 1, 8.doi:10.1186/2047-217X-1-8.
  • Xia Y, Gu H-f, Peng R et al. (2012) COI is better than 16S rRNA for DNA barcoding Asiatic salamanders (Amphibia: Caudata: Hynobiidae). Molecular Ecology Resources, 12, 4856.
  • Zhang Z-Q (ed) (2011) Animal biodiversity: an outline of higher-level classification and survey of taxonomic richness. Zootaxa, 3148, 1237.