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FilenameFormatSizeDescription
men12059-sup-0001-DataS1.docWord document159KData S1. Indexed library preparation and Agilent capture array hybridization for Illumina Genome Analyzer sequencing
men12059-sup-0002-TableS1.docxWord document55KTable S1. 75 Tursiops truncatus CATS orthologs (Aitken et al. 2004) for cetacean cross-species nuclear capture array. Orange highlighting represents exons based on annotation from the Ensembl Genome Browser (http://uswest.ensembl.org/index.html)
men12059-sup-0003-TableS2.docxWord document35KTable S2. Turtle sequence fragments generated from sequencing known microsatellite flanking regions and amplified fragment length polymorphism (AFLP) fragments (Roden et al. 2009 and unpublished data)
men12059-sup-0004-TableS3.docxWord document35KTable S3. Supplementary Table 3.Accession numbers and file sizes for raw sequence data (Fastq) files and BAM assembly files for mitogenomes and nuclear loci from published green turtle (C. mydas) mitogenomes. More data about the samples are in Duchene et al. 2012.
men12059-sup-0005-TableS4.docxWord document37KTable S4. Consensus sequences (relative to the capture array reference sequence) for Ziphius cavirostris nuclear loci, with identified SNPs. Loci are replicated for design of multiple SNPs in the same locus (SNP for assay design indicated by square brackets)
men12059-sup-0006-TableS5.docxWord document32KTable S5. Consensus sequences (relative to the capture array reference sequence) for Mesoplodon densirostris nuclear loci, with identified SNPs. Loci are replicated for design of multiple SNPs in the same locus (SNP for assay design indicated by square brackets)
men12059-sup-0007-TableS6.docxWord document22914KTable S6. Loci coverage per species

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