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Table S1 Gene lists from interspecific comparison of Lytle Ranch Neotoma lepida and Palm Springs Neotoma bryanti.

Table S2 Significantly overrepresented Gene Ontology terms for: (A) Lytle Ranch Neotoma lepida (B) Palm Springs Neotoma bryanti.

Table S3 Gene lists from interspecific comparison between Lytle Ranch Neotoma lepida and Casper's Wilderness Neotoma bryanti.

Table S4 Overrepresented Gene Ontology terms: (A) Lytle Ranch Neotoma lepida and (B) Casper's Wilderness Neotoma bryanti.

Table S5 Gene lists from intraspecific comparison between the Palm Springs and Casper's Wilderness Neotoma bryanti populations.

Table S6 Overrepresented Gene Ontology terms upregulated on (A) Palm Springs and (B) Casper's Wilderness Neotoma bryanti.

Fig. S1 Frequency distribution of contig lengths (bp) from woodrat transcriptome.

Fig. S2 Relative expression of superoxide dismutase, P450 (cytochrome) oxidoreductase and catechol-O-methyltransferase determined with qPCR.

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