Development of genomic resources for the tick Ixodes ricinus: isolation and characterization of single nucleotide polymorphisms
Version of Record online: 11 NOV 2013
© 2013 John Wiley & Sons Ltd
Molecular Ecology Resources
Volume 14, Issue 2, pages 393–400, March 2014
How to Cite
Quillery, E., Quenez, O., Peterlongo, P. and Plantard, O. (2014), Development of genomic resources for the tick Ixodes ricinus: isolation and characterization of single nucleotide polymorphisms. Molecular Ecology Resources, 14: 393–400. doi: 10.1111/1755-0998.12179
- Issue online: 20 FEB 2014
- Version of Record online: 11 NOV 2013
- Accepted manuscript online: 1 OCT 2013 11:05AM EST
- Manuscript Accepted: 20 SEP 2013
- Manuscript Revised: 17 SEP 2013
- Manuscript Received: 31 MAY 2013
- Pays de La Loire Region
- French National Research Agency
- European Commission
Figure S1 Workflow illustrating the application of 454 pyrosequencing in the de novo identification, selection and validation of SNPs.
Figure S2 Distribution of the reads (length in bp) for the two PicoTiterPlate regions in the Roche 454 GS FLX run.
Figure S3 Ratio of unique k-mers obtained for different k-mer size (nt).
Figure S4 Number of contigs identified by MIRA3 with a sequencing depth only between 2 and 20.
|men12179-sup-0002-TableS1.xlsx||application/msexcel||43K||Table S1 Excel file containing primers sequences for the 384 SNP loci.|
|men12179-sup-0003-TableS2.xlsx||application/msexcel||36K||Table S2 Excel file containing the 384 sequences containing SNP and with MAF for each locus.|
|men12179-sup-0004-TableS3.xlsx||application/msexcel||71K||Table S3 Excel file containing Observed (Ho) and expected (He) heterozygosity, p-value and standard error of Hardy–Weinberg Equilibrium test in the 6 populations with the largest population size (L041 to L064).|
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