A targeted next-generation sequencing toolkit for exon-based cichlid phylogenomics
Article first published online: 5 FEB 2014
© 2014 John Wiley & Sons Ltd
Molecular Ecology Resources
Volume 14, Issue 4, pages 802–811, July 2014
How to Cite
Ilves, K. L. and López-Fernández, H. (2014), A targeted next-generation sequencing toolkit for exon-based cichlid phylogenomics. Molecular Ecology Resources, 14: 802–811. doi: 10.1111/1755-0998.12222
- Issue published online: 13 JUN 2014
- Article first published online: 5 FEB 2014
- Accepted manuscript online: 10 JAN 2014 11:03AM EST
- Manuscript Accepted: 30 DEC 2013
- Manuscript Revised: 12 DEC 2013
- Manuscript Received: 31 OCT 2013
- Royal Ontario Museum
- Natural Sciences and Engineering Research Council of Canada (NSERC)
|men12222-sup-0001-AppendixS1.xlsx||application/msexcel||3078K||Appendix S1. Details about targeted exons and probes.|
|men12222-sup-0002-AppendixS2.pdf||application/PDF||201K||Appendix S2. Donnelly Sequencing Centre Custom Exome Enrichment Protocol V1.4.|
|men12222-sup-0003-AppendixS3.xlsx||application/msexcel||92K||Appendix S3. List of 892 exons captured for at least one cichlid species with a minimum length of 500 bp where bases were called with a minimum depth of 10 and minimum mapping and base quality scores of 20.|
|men12222-sup-0004-AppendixS4.xlsx||application/msexcel||50K||Appendix S4. List of 32 opsin exon targets captured where bases were called with a minimum depth of 10 and minimum mapping and base quality scores of 20. Subjective alignment quality assessed only for those exons that were captured for all 10 species.|
Appendix S5. Gene and species trees for analyses of 564 exon (649 549 bp) dataset (‘good’ + ‘passable’ alignments).
Appendix S6. Gene and species trees for analyses of 389 exon (443 142 bp) dataset (‘good’ alignments).
Appendix S7. Gene and species trees for analyses of 175 (206 407 bp) exon dataset (‘passable’ alignments).
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