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men12250-sup-0001-TableS1-S2.docWord document69K

Table S1 The proportion of data sets (simulated under Error Model 1) for which the correct number of populations (= 3) was inferred by STRUCTURE

Table S2 The proportion of data sets (simulated under Error Model 2) for which the correct number of populations (= 3) was inferred by STRUCTURE

men12250-sup-0002-Arlequin-settings.txtplain text document4K

Appendix S1 Example arlequin script file modified from LaunchArlSumStat.sh (cmpg.unibe.ch/software/arlequin35/Arl35Downloads.html)

men12250-sup-0003-Easypop-settings.txtplain text document4K

Appendix S2 Summary of EASYPOP settings used for simulation of raw GENEPOP files

men12250-sup-0004-Errorgen-settings-random.txtplain text document2K

Appendix S3 Example error scripts used to generate allelic dropouts, false alleles and missing data files by errorgen.exe (software developed by J. Wang)

men12250-sup-0005-Errorgen-settings-variable.txtplain text document2K

Appendix S4 Example error scripts used to generate variable allelic dropouts, false alleles and missing data files by errorgen.exe (software developed by J. Wang)

men12250-sup-0006-Genepop-settings.txtplain text document2K

Appendix S5 Example GENEPOP script file used to check significance of population differentiation

men12250-sup-0007-R-settings.txtplain text document3K

Appendix S6 Example R scripts to run two-way ANOVA and Tukey's HSD tests

men12250-sup-0008-Structure-settings.txtplain text document3K

Appendix S7 Example STRUCTURE scripts for the batch analysis of 100 data files modified from Structure software: Version 2.3 (Pritchard 2010)

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