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men12276-sup-0001-FigureS1.pdfapplication/PDF9KFigure S1 Contigs consensus sequence numbers across Gene Ontology (GO) categories for level 2 (A, B, C) and level 3 (D, E, F): A- and D- for Biological Process (BP), B- and E- for Cellular Components (CC), C- and F- For Molecular Functions (MF).
men12276-sup-0002-FigureS2.pdfapplication/PDF936KFigure S2 Blastn comparison for circular cpDNA genomes of Nothofagus spp (from assembly of both species) against Nothofagus nervosa and N. obliqua, plotting with CGView Server and including gene map information.
men12276-sup-0003-FigureS3.pdfapplication/PDF1191KFigure S3 Blastn comparison for circular cpDNA genomes of Nothofagus spp (from assembly of both species) against two Fagaceae species (Castanea mollisima and Q. rubra), plotting with CGView Server and including gene map information.
men12276-sup-0004-FigureS4.pdfapplication/PDF11KFigure S4 Mean of the estimated ln probability (of the data given K) from the Structure analysis with K ranging from 1 to 10.
men12276-sup-0005-FigureS5.pdfapplication/PDF12KFigure S5 Values for the ΔK criterium (based on Evanno et al. 2005) for K = 2–10, showing support for K = 2, and using the structure harvester tool.
men12276-sup-0006-TableS1.xlsxapplication/msexcel15KTable S1 SeqQual pipeline program list used in this study
men12276-sup-0007-TableS2.docxWord document17KTable S2 PCR primers and conditions
men12276-sup-0008-TableS3.xlsapplication/msexcel28KTable S3 Detailed statistics of the different mira assemblies compared
men12276-sup-0009-TableS4.xlsxapplication/msexcel2700KTable S4 Annotation results of contigs and singletons from blast2go analysis
men12276-sup-0010-TableS6.xlsapplication/msexcel199KTable S6 Annotated organelle genes of Nothofagus
men12276-sup-0011-TableS9.xlsapplication/msexcel650KTable S9 Putative SSR loci derived from the Nothofagus genome sequencing project
men12276-sup-0012-TableS10.xlsapplication/msexcel35KTable S10 Allele frequencies and sample size by locus and species
men12276-sup-0013-TableS11.xlsxapplication/msexcel11KTable S11 SSR motifs of genotyped markers in both species as revealed from Sanger sequencing
men12276-sup-0014-AppendixS5.txtplain text document3398KAppendix S5 Nucleotide sequences of blastx-annotated contigs and singletons.
men12276-sup-0015-AppendixS7.txtplain text document199KAppendix S7 Annotated chloroplast genes in gff3 format for the simultaneous assembly of both Nothofagus species.
men12276-sup-0016-AppendixS8.txtplain text document471KAppendix S8 Aligned pseudomolecules (single sequences with gaps represented as Ns) of Nothofagus spp., N. nervosa and N. obliqua cpDNA genomes.
men12276-sup-0017-AppendixS12.txtplain text document6KAppendix S12 Sanger sequences of amplified SSR loci.
men12276-sup-0018-AppendixS13.zipZip archive23KAppendix S13 SeqQual-BioperlScripts-Notho454.

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