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References

  • Alonso-Saez, L., Sanchez, O., Gasol, J.M., Balague, V., and Pedros-Alio, C. (2008) Winter-to-summer changes in the composition and single-cell activity of near-surface Arctic prokaryotes. Environ Microbiol 10: 24442454.
  • Bano, N., and Hollibaugh, J.T. (2002) Phylogenetic composition of bacterioplankton assemblages from the Arctic Ocean. Appl Environ Microbiol 68: 505518.
  • Bouvier, T., and del Giorgio, P.A. (2003) Factors influencing the detection of bacterial cells using fluorescence in situ hybridization (FISH): a quantitative review of published reports. FEMS Microbiol Ecol 44: 315.
  • Brinkmeyer, R., Knittel, K., Jurgens, J., Weyland, H., Amann, R., and Helmke, E. (2003) Diversity and structure of bacterial communities in arctic versus antarctic pack ice. Appl Environ Microbiol 69: 66106619.
  • Church, M.J., DeLong, E.F., Ducklow, H.W., Karner, M.B., Preston, C.M., and Karl, D.M. (2003) Abundance and distribution of planktonic archaea and bacteria in the waters west of the Antarctic Peninsula. Limnol Oceanogr 48: 18931902.
  • Cottrell, M.T., and Kirchman, D.L. (2003) Contribution of major bacterial groups to bacterial biomass production (thymidine and leucine incorporation) in the Delaware estuary. Limnol Oceanogr 48: 168178.
  • De Corte, D., Sintes, E., Yokokawa, T., and Herndl, G.J. (2011) Changes in viral and bacterial communities during the ice-melting season in the coastal Arctic (Kongsfjorden, Ny-Ålesund). Environ Microbiol 13: 18271841.
  • Delong, E.F., Wickham, G.S., and Pace, N.R. (1989) Phylogenetic stains – ribosomal RNA-based probes for the identification of single cells. Science 243: 13601363.
  • Fegatella, F., Lim, J., Kjelleberg, S., and Cavicchioli, R. (1998) Implications of rRNA operon copy number and ribosome content in the marine oligotrophic ultramicrobacterium Sphingomonas sp. strain RB2256. Appl Environ Microbiol 64: 44334438.
  • Fisher, M.M., and Triplett, E.W. (1999) Automated approach for ribosomal intergenic spacer analysis of microbial diversity and its application to freshwater bacterial communities. Appl Environ Microbiol 65: 46304636.
  • Galand, P.E., Casamayor, E.O., Kirchman, D.L., and Lovejoy, C. (2009) Ecology of the rare microbial biosphere of the Arctic Ocean. Proc Natl Acad Sci USA 106: 2242722432.
  • Gentile, G., Giuliano, L., D'Auria, G., Smedile, F., Azzaro, M., De Domenico, M., and Yakimov, M.M. (2006) Study of bacterial communities in Antarctic coastal waters by a combination of 16S rRNA and 16S rDNA sequencing. Environ Microbiol 8: 21502161.
  • del Giorgio, P.A., and Gasol, J.M. (2008) Physiological Structure and Signle-Cell Activity in Marine Bacterioplankton. Microbial Ecology of the Oceans. New York, NY, USA: Wiley & Sons.
  • Hasle, G.R., and Heimdal, B.R. (1998) The net phytoplankton in Kongsfjorden, Svalbard, July 1988, with general remarks on species composition of arctic phytoplankton. Polar Res 17: 3152.
  • Josephson, K.L., Gerba, C.P., and Pepper, I.L. (1993) Polymerase chain-reaction detection of nonviable bacterial pathogens. Appl Environ Microbiol 59: 35133515.
  • Kemp, P.F., Lee, S., and Laroche, J. (1993) Estimating the growth-rate of slowly growing marine-bacteria from RNA-content. Appl Environ Microbiol 59: 25942601.
  • Kerkhof, L., and Ward, B.B. (1993) Comparison of nucleic-acid hybridization and fluorometry for measurement of the relationship between RNA/DNA ratio and growth-rate in a marine bacterium. Appl Environ Microbiol 59: 13031309.
  • Kirchman, D.L., Cottrell, M.T., and Lovejoy, C. (2010) The structure of bacterial communities in the western Arctic Ocean as revealed by pyrosequencing of 16S rRNA genes. Environ Microbiol 12: 11321143.
  • Lee, N., Nielsen, P.H., Andreasen, K.H., Juretschko, S., Nielsen, J.L., Schleifer, K.H., and Wagner, M. (1999) Combination of fluorescent in situ hybridization and microautoradiography – a new tool for structure-function analyses in microbial ecology. Appl Environ Microbiol 65: 12891297.
  • Longnecker, K., Homen, D.S., Sherr, E.B., and Sherr, B.F. (2006) Similar community structure of biosynthetically active prokaryotes across a range of ecosystem trophic states. Aquat Microb Ecol 42: 265276.
  • Malmstrom, R.R., Straza, T.R.A., Cottrell, M.T., and Kirchman, D.L. (2007) Diversity, abundance, and biomass production of bacterial groups in the western Arctic Ocean. Aquat Microb Ecol 47: 4555.
  • Mills, H.J., Martinez, R.J., Story, S., and Sobecky, P.A. (2005) Characterization of microbial community structure in Gulf of Mexico gas hydrates: comparative analysis of DNA- and RNA-derived clone libraries. Appl Environ Microbiol 71: 32353247.
  • Moeseneder, M.M., Arrieta, J.M., Muyzer, G., Winter, C., and Herndl, G.J. (1999) Optimization of terminal-restriction fragment length polymorphism analysis for complex marine bacterioplankton communities and comparison with denaturing gradient gel electrophoresis. Appl Environ Microbiol 65: 35183525.
  • Moeseneder, M.M., Arrieta, J.M., and Herndl, G.J. (2005) A comparison of DNA- and RNA-based clone libraries from the same marine bacterioplankton community. FEMS Microbiol Ecol 51: 341352.
  • Morris, R.M., Rappe, M.S., Connon, S.A., Vergin, K.L., Siebold, W.A., Carlson, C.A., and Giovannoni, S.J. (2002) SAR11 clade dominates ocean surface bacterioplankton communities. Nature 420: 806810.
  • Muyzer, G., and Smalla, K. (1998) Application of denaturing gradient gel electrophoresis (DGGE) and temperature gradient gel electrophoresis (TGGE) in microbial ecology. Anton Leeuw Int J G 73: 127141.
  • Owrid, G., Socal, G., Civitarese, G., Luchetta, A., Wiktor, J., Nothig, E.M., et al. (2000) Spatial variability of phytoplankton, nutrients and new production estimates in the waters around Svalbard. Polar Res 19: 155171.
  • Pedros-Alio, C. (2006) Marine microbial diversity: can it be determined? Trends Microbiol 14: 257263.
  • Pham, V.D., Konstantinidis, K.T., Palden, T., and DeLong, E.F. (2008) Phylogenetic analysesof ribosomal DNA-containing bacterioplankton genome fragments from a 4000 m vertical profile in the North Pacific Subtropical Gyre. Environ Microbiol 10: 23132330.
  • Piwosz, K., Walkusz, W., Hapter, R., Wieczorek, P., Hop, H., and Wiktor, J. (2009) Comparison of productivity and phytoplankton in a warm (Kongsfjorden) and a cold (Hornsund) Spitsbergen fjord in mid-summer 2002. Polar Biol 32: 549559.
  • Pommier, T., Canback, B., Riemann, L., Bostrom, K.H., Simu, K., Lundberg, P., et al. (2007) Global patterns of diversity and community structure in marine bacterioplankton. Mol Ecol 16: 867880.
  • Poulsen, L.K., Ballard, G., and Stahl, D.A. (1993) Use of ribosomal-RNA fluorescence insitu hybridization for measuring the activity of single cells in young and established biofilms. Appl Environ Microbiol 59: 13541360.
  • Schoemann, V., Becquevort, S., Stefels, J., Rousseau, W., and Lancelot, C. (2005) Phaeocystis blooms in the global ocean and their controlling mechanisms: a review. J Sea Res 53: 4366.
  • Selje, N., Simon, M., and Brinkhoff, T. (2004) A newly discovered Roseobacter cluster in temperate and polar oceans. Nature 427: 445448.
  • Sintes, E., and Herndl, G.J. (2006) Quantifying substrate uptake by individual cells of marine bacterioplankton by catalyzed reporter deposition fluorescence in situ hybridization combined with microautoradiography. Appl Environ Microbiol 72: 70227028.
  • Smith, E.M., and del Giorgio, P.A. (2003) Low fractions of active bacteria in natural aquatic communities? Aquat Microb Ecol 31: 203208.
  • Sogin, M.L., Morrison, H.G., Huber, J.A., Mark Welch, D., Huse, S.M., Neal, P.R., et al. (2006) Microbial diversity in the deep sea and the underexplored ‘rare biosphere’. Proc Natl Acad Sci USA 103: 1211512120.
  • Teeling, H., Fuchs, B.M., Becher, D., Klockow, C., Gardebrecht, A., et al. (2012) Substrate-controlled succession of marine bacterioplankton populations induced by a phytoplankton bloom. Science 336: 608611.
  • Teira, E., Reinthaler, T., Pernthaler, A., Pernthaler, J., and Herndl, G.J. (2004) Combining catalyzed reporter deposition–fluorescence in situ hybridization and microautoradiography to detect substrate utilization by bacteria and archaea in the deep ocean. Appl Environ Microbiol 70: 44114414.
  • Zaballos, M., Lopez-Lopez, A., Ovreas, L., Bartual, S.G., D'Auria, G., Alba, J.C., et al. (2006) Comparison of prokaryotic diversity at offshore oceanic locations reveals a different microbiota in the Mediterranean Sea. FEMS Microbiol Ecol 56: 389405.
  • Zhang, Y., Jiao, N.Z., Cottrell, M.T., and Kirchman, D.L. (2006) Contribution of major bacterial groups to bacterial biomass production along a salinity gradient in the South China Sea. Aquat Microb Ecol 43: 233241.