The transition from freshwater to marine iron-oxidizing bacterial lineages along a salinity gradient on the Sheepscot River, Maine, USA
Article first published online: 12 MAR 2013
© 2013 John Wiley & Sons Ltd and Society for Applied Microbiology
Environmental Microbiology Reports
Thematic Issue: Plant-Microbe Interactions
Volume 5, Issue 3, pages 453–463, June 2013
How to Cite
McBeth, J. M., Fleming, E. J. and Emerson, D. (2013), The transition from freshwater to marine iron-oxidizing bacterial lineages along a salinity gradient on the Sheepscot River, Maine, USA. Environmental Microbiology Reports, 5: 453–463. doi: 10.1111/1758-2229.12033
- Issue published online: 22 APR 2013
- Article first published online: 12 MAR 2013
- Accepted manuscript online: 10 JAN 2013 01:55AM EST
- Manuscript Accepted: 23 DEC 2012
- Manuscript Revised: 3 DEC 2012
- Manuscript Received: 14 AUG 2012
- Office for Naval Research. Grant Number: N00014-08-1–0334
- National Science Foundation. Grant Number: IOS – 0951077
Fig. S1. Rarefaction curves for pyrosequencing data.
A. At an OTU definition of 97% similarity.
B. At an OTU definition of 95% similarity.
Fig. S2. Unique OTUs for known FeOB and FeRB genera, shown as proportions of the total unique OTUs for the genera shown.
Fig. S3. Tagged pyrosequencing data – comparison of proportions of phylum and class level classifications of raw read to unique OTU data.
Table S1. Comparison of alpha diversity indices of bacterial communities in iron mat samples from the Sheepscot River.
Table S2. FISH results. Note samples from 2010 are reported at ± only, due to preservation problems.
Table S3. This Table details modifications made to the trainset 6 RDP improvements. Modified RDP classifier trainset 6 (JMM version 1.5).
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