SEARCH

SEARCH BY CITATION

References

  • Arnason, A.N. (1973) The estimation of population size, migration rates and survival in a stratified population. Researches on Population Ecology, 15, 18.
  • Barry, S.C., Brooks, S.P., Catchpole, E.A. & Morgan, B.J.T. (2003) The analysis of ring-recovery data using random effects. Biometrics, 59, 5465.
  • Bates, D. & Sarkar, D. (2007) lme4: Linear mixed-effects models, R package version 0.9975-13, URL http://www.R-project.org.
  • Cam, E., Link, W.A., Cooch, E.G., Monnat, J.Y. & Danchin, E. (2002) Individual covariation in life-history traits: seeing the trees despite the forest. American Naturalist, 159, 96105.
  • Choquet, R. (2008) Automatic generation of multistate capture-recapture models. The Canadian Journal of Statistics, 36, 4357.
  • Choquet, R. & Gimenez, O. (2012) Towards built-in capture–recapture mixed models in program E-SURGE. Journal of Ornithology, 152, 625639.
  • Choquet, R., Rouan, L. & Pradel, R. (2009) Program E-SURGE: a software application for fitting multievent models. Modeling Demographic Processes in Marked Populations (eds D.L. Thomson, E.G. Cooch & M.J. Conroy), pp. 845865. Springer, Dunedin.
  • Choquet, R., Lebreton, J.D., Gimenez, O., Reboulet, A.M. & Pradel, R. (2009) U-CARE: utilities for performing goodness of fit tests and manipulating CApture-REcapture data. Ecography, 32, 10711074.
  • Cohas, A., Bonenfant, C., Gaillard, J.M. & Allaine, D. (2007) Are extra-pair young better than within-pair young? A comparison of survival and dominance in alpine marmot. Journal of Animal Ecology, 76, 771781.
  • Cubaynes, S., Pradel, R., Choquet, R., Duchamp, C., Gaillard, J.M., Lebreton, J.D., Marboutin, E., Miquel, C., Reboulet, A.M., Poillot, C., Taberlet, P. & Gimenez, O. (2010) Importance of accounting for detection heterogeneity when estimating abundance: the case of French Wolves. Conservation Biology, 24, 621626.
  • Diez-Roux, A.V. (2000) Multilevel analysis in public health research. Annual Reviews Public Health, 21, 171192.
  • Doligez, B., Gustafsson, L. & Pärt, T. (2009) ‘Heritability’ of dispersal propensity in a patchy population. Proceedings of the Royal Society B-Biological Sciences, 276, 28292836.
  • Doligez, B. & Pärt, T. (2008) Estimating fitness consequences of dispersal: a road to ‘know-where’? Non-random dispersal and the underestimation of dispersers' fitness. Journal of Animal Ecology, 77, 11991211.
  • Doligez, B., Danchin, E., Clobert, J. & Gustafsson, L. (1999) The use of conspecific reproductive success for breeding habitat selection in a non-colonial, hole-nesting species, the collared flycatcher. Journal of animal ecology, 68, 11931206.
  • Doligez, B., Clobert, J., Pettifor, R.A., Rowcliffe, M., Gustafsson, L., Perrins, C.M. & McCleery, R.H. (2002) Costs of reproduction: assessing responses to brood size manipulation on life-history and behavioural traits using multi-state capture-recapture models. Journal of Applied Statistics, 29, 407423.
  • Doligez, B., Pärt, T., Danchin, E., Clobert, J. & Gustafsson, L. (2004) Availability and use of public information and conspecific density for settlement decisions in the collared flycatcher. Journal of Animal Ecology, 58, 305320.
  • Doligez, B., Daniel, G., Warin, P., Pärt, T., Gustafsson, L. & Réale, D. (2012) Estimation and comparison of heritability and parent–offspring resemblance in dispersal probability from capture–recapture data using different methods: the Collared Flycatcher as a case study. Journal of Ornithology, 152, 539554.
  • Doran, H., Bliese, P., Bates, D. & Dowling, M. (2007) Estimating the multilevel Rasch model: with the lme4 package. Journal of Statistical Software, 20, 18.
  • Gelman, A. & Hill, J. (2006) Data Analysis Using Regression and Multilevel/Hierarchical Models. Cambridge University Press, Cambridge.
  • Gimenez, O. & Choquet, R. (2010) Individual heterogeneity in studies on marked animals using numerical integration: capture-recapture mixed models. Ecology, 91, 951957.
  • Grosbois, V., Harris, M.P., Anker-Nilssen, T., McCleery, R.H., Shaw, D.N., Morgan, B.J.T. & Gimenez, O. (2009) Modeling survival at multi-population scales using mark-recapture data. Ecology, 90, 29222932.
  • Gustafsson, L. (1989) Collared Flycatcher. Academic Press, London.
  • Johnson, D.S. & Hoeting, J.A. (2003) Autoregressive models for capture-recapture data: a Bayesian approach. Biometrics, 59, 341350.
  • Lahoz-Monfort, J.J., Morgan, B.J.T., Harris, M.P., Wanless, S. & Freeman, S.N. (2009) A capture-recapture model for exploring multi-species synchrony in survival. Methods in Ecology and Evolution, 2, 116124.
  • Lebreton, J.-D., Burnham, K.P., Clobert, J. & Anderson, D.R. (1992) Modeling survival and testing biological hypotheses using marked animals: a unified approach with case studies. Ecological Monographs, 62, 67118.
  • Lebreton, J.D., Nichols, J.D., Barker, R.J., Pradel, R. & Spendelow, J.A. (2009) Modeling individual animal histories with multistate capture-recapture models. Advances in Ecological Research (ed. H. Caswell), pp. 87173. Elsevier Academic Press Inc, San Diego.
  • Lin, X.H. (1997) Variance component testing in generalised linear models with random effects. Biometrika, 84, 309326.
  • Liu, Q. & Pierce, D.A. (1994) A note on Gauss-Hermite quadrature. Biometrika, 81, 624629.
  • Madsen, H. & Thyregod, P. (2010) Introduction to General and Generalized Linear Models. Chapman & Hall/CRC Texts in Statistical Science, Boca Raton.
  • Massot, M. & Clobert, J. (2000) Processes at the origin of similarities in dispersal behaviour among siblings. Journal of Evolutionary Biology, 13, 707719.
  • Nakagawa, S. & Schielzeth, H. (2010) Repeatability for Gaussian and non-Gaussian data: a practical guide for biologists. Biological Reviews, 85, 935956.
  • Papaïx, J., Cubaynes, S., Buoro, M., Charmantier, A., Perret, P. & Gimenez, O. (2010) Combining capture-recapture data and pedigree information to assess heritability of demographic parameters in the wild. Journal of Evolutionary Biology, 23, 21762184.
  • Pärt, T. & Gustafsson, L. (1989) Breeding dispersal in the collared flycatcher (Ficedula albicollis): possible causes and reproductive consequences. Journal of Animal Ecology, 58, 305320.
  • Péron, G., Crochet, P.A., Choquet, R., Pradel, R., Lebreton, J.D. & Gimenez, O. (2010) Capture-recapture models with heterogeneity to study survival senescence in the wild. Oikos, 119, 524532.
  • Pinheiro, J.C. & Bates, D.M. (2000) Mixed Effects Models in S and S-Plus. Statistics and Computing. Springer Verlag, New York.
  • van de Pol, M.V. & Wright, J. (2009) A simple method for distinguishing within- versus between-subject effects using mixed models. Animal Behaviour, 77, 753758.
  • Pollock, K.H., Hines, J.E. & Nichols, J.D. (1985) Goodness-of-fit tests for open capture-recapture models. Biometrics, 41, 399410.
  • Pradel, R., Wintrebert, C.M.A. & Gimenez, O. (2003) A proposal for a goodness-of-fit test to the Arnason-Schwarz multisite capture-recapture model. Biometrics, 59, 4353.
  • Royle, J.A. (2008) Modeling individual effects in the Cormack-Jolly-Seber model: a state-space formulation. Biometrics, 64, 364370.
  • Sanz-Aguilar, A., Tavecchia, G., Genovart, M., Igual, J.M., Oro, D., Rouan, L. & Pradel, R. (2011) Studying the reproductive skipping behavior in long-lived birds by adding nest inspection to individual-based data. Ecological Applications, 21, 555564.
  • Saracco, J.F., Royle, J.A., DeSante, D.F. & Gardner, B. (2010) Modeling spatial variation in avian survival and residency probabilities. Ecology, 91, 18851891.
  • Schmutz, J.A., Ward, D.H., Sedinger, J.S. & Rexstad, E.A. (1995) Survival estimation and the effects of dependency among animals. Journal of Applied Statistics, 22, 673681.
  • Schwarz, C.J. (2002) Real and quasi-experiments in capture-recapture studies. Journal of Applied Statistics, 29, 459473.
  • Schwarz, C.J., Schweigert, J.F. & Arnason, A.N. (1993) Estimating migration rates using tag-recovery data. Biometrics, 49, 177193.
  • Self, S.G. & Liang, K.Y. (1987) Asymptotic properties of maximum-likelihood estimators and likelihood ratio tests under nonstandard conditions. Journal of the American Statistical Association, 82, 605610.
  • Sendecka, J. (2007) Age, longevity and life-history trade-offs in the collared flycatcher (Ficedula albicollis). PhD, University of Uppsala.
  • Vazquez, A.I., Bates, D.M., Rosa, G.J.M., Gianola, D. & Weigel, K.A. (2010) Technical note: an R package for fitting generalized linear mixed models in animal breeding. Journal of Animal Science, 88, 497504.
  • Wolfinger, R.D. (1996) Heterogeneous variance: covariance structures for repeated measures. Journal of Agricultural, Biological, and Environmental Statistics, 1, 205230.
  • Zhu, H.T., Gu, M.G. & Peterson, B. (2007) Maximum likelihood from spatial random effects models via the stochastic approximation expectation maximization algorithm. Statistics and Computing, 17, 163177.