SIDIER: substitution and indel distances to infer evolutionary relationships
Article first published online: 18 NOV 2013
© 2013 The Author. Methods in Ecology and Evolution © 2013 British Ecological Society
Methods in Ecology and Evolution
Volume 4, Issue 12, pages 1195–1200, December 2013
How to Cite
Muñoz-Pajares, A. J. (2013), SIDIER: substitution and indel distances to infer evolutionary relationships. Methods in Ecology and Evolution, 4: 1195–1200. doi: 10.1111/2041-210X.12118
- Issue published online: 9 DEC 2013
- Article first published online: 18 NOV 2013
- Accepted manuscript online: 24 SEP 2013 10:46AM EST
- Manuscript Accepted: 11 SEP 2013
- Manuscript Received: 1 JUL 2013
- Spanish Ministry of Education and Science. Grant Number: FPU:AP2006-00685
Fig. S1. Example of an indel distance matrix estimation using the MCIC function.
Fig. S2. Schematic view of the MCIC pairwise indel distance estimation between sequences C and E represented in Figure S1.
Fig. S3. Example of an indel distance matrix estimation using the SIC function.
Fig. S4. Example of an indel distance matrix estimation using the BARRIEL function.
Fig. S5. Example of an indel distance matrix estimation using the FIFTH function.
|mee312118-sup-0002-DataS1.fas||text/fas||42K||Data S1. Sequence alignment analysed using SIDIER as described in the main text.|
|mee312118-sup-0003-DataS2.fas||text/fas||42K||Data S2. Sequence alignment used as input for the batchfile provided in Data S4.|
|mee312118-sup-0004-DataS3.r||text/r||6K||Data S3. Commented script to perform a complete sequence analysis using SIDIER.|
|mee312118-sup-0005-DataS4.r||text/r||2K||Data S4. Batchfile to perform a customized analysis using SIDIER in only 5 steps (see instructions in the first lines of the file).|
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