Table S1. Significant QTLs detected in both HDID-1 and HDID-2 selections.

Table S2. Consensus Module Validation: Z score 2 to 10 (moderate); score >10 (substantial).

Table S3. GO annotation of consensus network modules.

Table S4. Modules enriched with cell type markers.

Table S5. Ninety-four transcripts differentially expressed with directionality concordant across selections.

Table S6. GO annotation of differentialy expressed genes.

Table S7. Module level network connectivity changes.

Table S8. Transcript level network connectivity changes.

Table S9. INIA list of genes associated with ethanol phenotypes.

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