Additional Supporting Information may be found in the online version of this article.

ajt12588-sm-0001-SupFig-S1.pdf98KFigure S1: Comparison of microbiota diversity between sample types and sampling time points (Shannon index). Significant differences are shown (*p < 0.05) as measured by Wilcoxon rank sum test. (A) Pretransplant, (B) 1-month posttransplant, (C) 6-month posttransplant time point.
ajt12588-sm-0001-SupFig-S2.pdf132KFigure S2: Venn diagram showing shared OTUs between all three compared sample types. Only OTUs with an abundance of at least 0.1% in one of the samples were considered.
ajt12588-sm-0001-SupFig-S3.pdf175KFigure S3: Phylogenetic distance-based sample group comparisons. Unweighted or weighted UniFrac distances were calculated and plotted between oral or rectal sample pairs between the groups specified below the plots. None of the differences between groups are significant (p > 0.05, Wilcoxon rank sum test).
ajt12588-sm-0004-SuppTbl-S1.xlsx219KTable S1: OTU assignments of all reads on the genus level.

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