Acta Crystallographica Section D

© International Union of Crystallography

Cover image for Vol. 69 Issue 6

June 2013

Volume 69, Issue 6

Pages 925–1192

  1. research papers

    1. Top of page
    2. research papers
    3. addenda and errata
    1. Structure of the protein core of translation initiation factor 2 in apo, GTP-bound and GDP-bound forms (pages 925–933)

      Angelita Simonetti, Stefano Marzi, Attilio Fabbretti, Isabelle Hazemann, Lasse Jenner, Alexandre Urzhumtsev, Claudio O. Gualerzi and Bruno P. Klaholz

      DOI: 10.1107/S0907444913006422

    2. Structural insight into plant programmed cell death mediated by BAG proteins in Arabidopsis thaliana (pages 934–945)

      Shasha Fang, Luhua Li, Boyang Cui, Shuzhen Men, Yuequan Shen and Xue Yang

      DOI: 10.1107/S0907444913003624

    3. Resolution of structural heterogeneity in dynamic crystallography (pages 946–959)

      Zhong Ren, Peter W. Y. Chan, Keith Moffat, Emil F. Pai, William E. Royer Jr, Vukica Šrajer and Xiaojing Yang

      DOI: 10.1107/S0907444913003454

    4. A novel interdomain interface in crystallins: structural characterization of the βγ-crystallin from Geodia cydonium at 0.99 Å resolution (pages 960–967)

      Alessandro Vergara, Marco Grassi, Filomena Sica, Elio Pizzo, Giuseppe D'Alessio, Lelio Mazzarella and Antonello Merlino

      DOI: 10.1107/S0907444913003569

    5. Structural consequences of cutting a binding loop: two circularly permuted variants of streptavidin (pages 968–977)

      Isolde Le Trong, Vano Chu, Yi Xing, Terry P. Lybrand, Patrick S. Stayton and Ronald E. Stenkamp

      DOI: 10.1107/S0907444913003855

    6. High-resolution powder X-ray data reveal the T6 hexameric form of bovine insulin (pages 978–990)

      Irene Margiolaki, Anastasia E. Giannopoulou, Jonathan P. Wright, Lisa Knight, Mathias Norrman, Gerd Schluckebier, Andrew N. Fitch and Robert B. Von Dreele

      DOI: 10.1107/S0907444913003867

    7. Structure and functional studies of the ribonuclease binase Glu43Ala/Phe81Ala mutant (pages 991–996)

      V. A. Mitkevich, A. A. Schulga, A. A. Trofimov, P. V. Dorovatovskii, D. A. Goncharuk, E. N. Tkach, A. A. Makarov and K. M. Polyakov

      DOI: 10.1107/S0907444913004046

    8. Revisiting the Haloarcula marismortui 50S ribosomal subunit model (pages 997–1004)

      Azat Gabdulkhakov, Stanislav Nikonov and Maria Garber

      DOI: 10.1107/S0907444913004745

    9. Yellow fluorescent protein phiYFPv (Phialidium): structure and structure-based mutagenesis (pages 1005–1012)

      Nadya V. Pletneva, Vladimir Z. Pletnev, Ekaterina Souslova, Dmitry M. Chudakov, Sergey Lukyanov, Vladimir I. Martynov, Svetlena Arhipova, Igor Artemyev, Alexander Wlodawer, Zbigniew Dauter and Sergei Pletnev

      DOI: 10.1107/S0907444913004034

    10. Structure of starch synthase I from barley: insight into regulatory mechanisms of starch synthase activity (pages 1013–1025)

      Jose A. Cuesta-Seijo, Morten M. Nielsen, Lucia Marri, Hidenori Tanaka, Sophie R. Beeren and Monica M. Palcic

      DOI: 10.1107/S090744491300440X

    11. Structure of the Triatoma virus capsid (pages 1026–1037)

      Gaëlle Squires, Joan Pous, Jon Agirre, Gabriela S. Rozas-Dennis, Marcelo D. Costabel, Gerardo A. Marti, Jorge Navaza, Stéphane Bressanelli, Diego M. A. Guérin and Felix A. Rey

      DOI: 10.1107/S0907444913004617

    12. The use of VLD (vive la difference) in the molecular-replacement approach: a pipeline (pages 1038–1044)

      Benedetta Carrozzini, Giovanni Luca Cascarano, Giuliana Comunale, Carmelo Giacovazzo and Annamaria Mazzone

      DOI: 10.1107/S0907444913004435

    13. Structures of the catalytic EAL domain of the Escherichia coli direct oxygen sensor (pages 1045–1053)

      Miroslaw Tarnawski, Thomas R. M. Barends, Elisabeth Hartmann and Ilme Schlichting

      DOI: 10.1107/S0907444913004423

    14. New features of vault architecture and dynamics revealed by novel refinement using the deformable elastic network approach (pages 1054–1061)

      Arnau Casañas, Jordi Querol-Audí, Pablo Guerra, Joan Pous, Hideaki Tanaka, Tomitake Tsukihara, Nuria Verdaguer and Ignasi Fita

      DOI: 10.1107/S0907444913004472

    15. Simulation of modulated protein crystal structure and diffraction data in a supercell and in superspace (pages 1062–1072)

      Jeffrey J. Lovelace, Peter D. Simone, Václav Petříček and Gloria E. O. Borgstahl

      DOI: 10.1107/S0907444913004630

    16. Structure of Streptococcus agalactiae tip pilin GBS104: a model for GBS pili assembly and host interactions (pages 1073–1089)

      Vengadesan Krishnan, Prabhat Dwivedi, Brandon J. Kim, Alexandra Samal, Kevin Macon, Xin Ma, Arunima Mishra, Kelly S. Doran, Hung Ton-That and Sthanam V. L. Narayana

      DOI: 10.1107/S0907444913004642

    17. S-Adenosyl-S-carboxymethyl-L-homocysteine: a novel cofactor found in the putative tRNA-modifying enzyme CmoA (pages 1090–1098)

      Robert T. Byrne, Fiona Whelan, Pierre Aller, Louise E. Bird, Adam Dowle, Carina M. C. Lobley, Yamini Reddivari, Joanne E. Nettleship, Raymond J. Owens, Alfred A. Antson and David G. Waterman

      DOI: 10.1107/S0907444913004939

    18. Structure of an outer surface lipoprotein BBA64 from the Lyme disease agent Borrelia burgdorferi which is critical to ensure infection after a tick bite (pages 1099–1107)

      Kalvis Brangulis, Kaspars Tars, Ivars Petrovskis, Andris Kazaks, Renate Ranka and Viesturs Baumanis

      DOI: 10.1107/S0907444913005726

    19. Structure of 2-haloacid dehalogenase from Pseudomonas syringae pv. tomato DC3000 (pages 1108–1114)

      Zhiqiang Hou, Hongmei Zhang, Mei Li and Wenrui Chang

      DOI: 10.1107/S0907444913006021

    20. A novel inhibitor-binding site on the HIV-1 capsid N-terminal domain leads to improved crystallization via compound-mediated dimerization (pages 1115–1123)

      Christopher T. Lemke, Steve Titolo, Nathalie Goudreau, Anne-Marie Faucher, Stephen W. Mason and Pierre Bonneau

      DOI: 10.1107/S0907444913006409

    21. Mapping the conformational space accessible to BACE2 using surface mutants and cocrystals with Fab fragments, Fynomers and Xaperones (pages 1124–1137)

      David W. Banner, Bernard Gsell, Jörg Benz, Julian Bertschinger, Dominique Burger, Simon Brack, Simon Cuppuleri, Maja Debulpaep, Alain Gast, Dragan Grabulovski, Michael Hennig, Hans Hilpert, Walter Huber, Andreas Kuglstatter, Eric Kusznir, Toon Laeremans, Hugues Matile, Christian Miscenic, Arne C. Rufer, Daniel Schlatter, Jan Steyaert, Martine Stihle, Ralf Thoma, Martin Weber and Armin Ruf

      DOI: 10.1107/S0907444913006574

    22. Structural analysis of the antibiotic-recognition mechanism of MarR proteins (pages 1138–1149)

      Yu-Ming Chang, Cammy K.-M. Chen, Tzu-Ping Ko, Masatoshi Weiting Chang-Chien and Andrew H.-J. Wang

      DOI: 10.1107/S0907444913007117

    23. X-ray structure of the first `extremo-α-carbonic anhydrase', a dimeric enzyme from the thermophilic bacterium Sulfurihydrogenibium yellowstonense YO3AOP1 (pages 1150–1159)

      Anna Di Fiore, Clemente Capasso, Viviana De Luca, Simona Maria Monti, Vincenzo Carginale, Claudiu T. Supuran, Andrea Scozzafava, Carlo Pedone, Mosè Rossi and Giuseppina De Simone

      DOI: 10.1107/S0907444913007208

    24. High-resolution crystal structure of the catalytic domain of human dual-specificity phosphatase 26 (pages 1160–1170)

      Eun-Young Won, Yong Xie, Chie Takemoto, Lirong Chen, Zhi-Jie Liu, Bi-Cheng Wang, Daeyoup Lee, Eui-Jeon Woo, Sung Goo Park, Mikako Shirouzu, Shigeyuki Yokoyama, Seung Jun Kim and Seung-Wook Chi

      DOI: 10.1107/S0907444913004770

    25. New model-fitting and model-completion programs for automated iterative nucleic acid refinement (pages 1171–1179)

      Keitaro Yamashita, Yong Zhou, Isao Tanaka and Min Yao

      DOI: 10.1107/S0907444913007191

    26. Ultrahigh-resolution crystal structures of Z-DNA in complex with Mn2+ and Zn2+ ions (pages 1180–1190)

      Pawel Drozdzal, Miroslaw Gilski, Ryszard Kierzek, Lechoslaw Lomozik and Mariusz Jaskolski

      DOI: 10.1107/S0907444913007798

  2. addenda and errata

    1. Top of page
    2. research papers
    3. addenda and errata
    1. You have free access to this content
      Novel c-di-GMP recognition modes of the mouse innate immune adaptor protein STING. Corrigendum (page 1191)

      Ko-Hsin Chin, Zhi-Le Tu, Yi-Che Su, Yu-Jen Yu, Hui-Chen Chen, Yuan-Chao Lo, Chin-Pan Chen, Glen N. Barber, Mary Lay-Cheng Chuah, Zhao-Xun Liang and Shan-Ho Chou

      DOI: 10.1107/S0907444913012158

      This article corrects:

      Novel c-di-GMP recognition modes of the mouse innate immune adaptor protein STING

      Vol. 69, Issue 3, 352–366, Article first published online: 24 MAR 2013

    2. You have free access to this content
      Plant multifunctional nuclease TBN1 with unexpected phospholipase activity: structural study and reaction-mechanism analysis. Corrigendum (page 1192)

      Tomáš Koval', Petra Lipovová, Tomáš Podzimek, Jaroslav Matoušek, Jarmila Dušková, Tereza Skálová, Andrea Štěpánková, Jindřich Hašek and Jan Dohnálek

      DOI: 10.1107/S0907444913003284

      This article corrects:

      Plant multifunctional nuclease TBN1 with unexpected phospholipase activity: structural study and reaction-mechanism analysis

      Vol. 69, Issue 2, 213–226, Article first published online: 6 FEB 2013

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