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Disclaimer: Supplementary materials have been peer-reviewed but not copyedited.

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Supplementary methods, list of species included in the Afro-Alpine reference library version 1.0, number of reads remaining after each filtering step, assigned taxonomic identities of sequences per sample for both dataset 1 and dataset 2, and taxonomic identities of sequences removed from the datasets (Appendix S1) are available on-line. The authors are solely responsible for the content and functionality of these materials. Queries (other than absence of the material) should be directed to the corresponding author.

A fasta file of the taxonomic reference library version 1.0 and all sequences with their taxonomic identity (output from the program ecoTag) have been deposited in the Dryad Digital Repository: http://doi.org/10.5061/dryad.vg7b1.

Please note: Wiley Blackwell is not responsible for the content or functionality of any supporting information supplied by the authors. Any queries (other than missing content) should be directed to the corresponding author for the article.