SEARCH

SEARCH BY CITATION

References

  • Bastien, L. & Rochette-Egly, C. 2004. Nuclear retinoid receptors and the transcription of retinoid-target genes. Gene 328, 116.
  • Campo-Paysaa, F., Marlétaz, F., Laudet, V. & Schubert, M. 2008. Retinoic acid signaling in development: tissue-specific functions and evolutionary origins. Genesis 46, 640656.
  • Cañestro, C., Bassham, S. & Postlethwait, J. H. 2005. Development of the central nervous system in the larvacean Oikopleura dioica and the evolution of the chordate brain. Dev. Biol. 285, 298315.
  • Cañestro, C. & Postlethwait, J. H. 2007. Development of a chordate anterior-posterior axis without classical retinoic acid signaling. Dev. Biol. 305, 522538.
  • Cañestro, C., Postlethwait, J. H., Gonzàlez-Duarte, R. & Albalat, R. 2006. Is retinoic acid genetic machinery a chordate innovation? Evol. Dev. 8, 394406.
  • Carpenter, E. M., Goddard, J. M., Chisaka, O., Manley, N. R. & Capecchi, M. R. 1993. Loss of Hox-A1 (Hox-1.6) function results in the reorganization of the murine hindbrain. Development 118, 10631075.
  • Chisaka, O., Musci, T. E. & Capecchi, M. R. 1992. Developmental defects of the ear, cranial nerves and hindbrain resulting from targeted disruption of the mouse homeobox gene Hox 1.6. Nature 355, 516520.
  • Corbo, J. C., Levine, M. & Zeller, R. W. 1997. Characterization of a notochord-specific enhancer from the Brachyury promoter region of the ascidian, Ciona intestinalis. Development 124, 589602.
  • Dehal, P., Satou, Y., Campbell, R. K., Chapman, J., Degnan, B., Tomaso, A. D., Davidson, B., Gregorio, A. D., Gelpke, M., Goodstein, D. M., Harafuji, N., Hastings, K. E. M., Ho, I., Hotta, K., Huang, W., Kawashima, T., Lemaire, P., Martinez, D., Meinertzhagen, I. A., Necula, S., Nonaka, M., Putnam, N., Rash, S., Saiga, H., Satake, M., Terry, A., Yamada, L., Wang, H. G., Awazu, S., Azumi, K., Boore, J., Branno, M., Chin-bow, S., DeSantis, R., Doyle, S., Francio, P., Keys, D. N., Haga, S., Hayashi, H., Hino, K., Imai, K. S., Inaba, K., Kano, S., Kobayashi, K., Kobayashi, M., Lee, B. I., Makabe, K. W., Manohar, C., Matessi, G., Medina, M., Mochizuki, Y., Mount, S., Morishita, T., Miura, S., Nakayama, A., Nishizaka, S., Nomoto, H., Ohta, F., Oishi, K., Rigoutsos, I., Sano, M., Sasaki, A., Sasakura, Y., Shoguchi, E., Shin-i, T., Spagnuolo, A., Steinier, D., Suzuki, M. M., Tassy, O., Takatori, N., Tokuoka, M., Yagi, K., Yoshizaki, F., Wada, S., Zhang, C., Hyatt, P. D., Larimer, F., Detter, C., Doggett, N., Glavina, T., Hawkins, T., Richardson, P., Lucas, S., Kohara, Y., Levine, M., Satoh, N. & Rokhsar, D. S. 2002. The draft genome of Ciona intestinalis: insights into chordate and vertebrate origins. Science 298, 21572167.
  • Di Gregorio, A. & Levine, M. 1998. Ascidian embryogenesis and the origins of the chordate body plan. Curr. Opin. Genet. Dev. 8, 457463.
  • Dollé, P., Lufkin, T., Krumlauf, R., Mark, M., Duboule, D. & Chambon, P. 1993. Local alterations of Krox-20 and Hox gene expression in the hindbrain suggest lack of rhombomeres 4 and 5 in homozygote null Hoxa-1 (Hox-1.6) mutant embryos. Proc. Natl Acad. Sci. USA 90, 76667670.
  • Dupé, V., Davenne, M., Brocard, J., Dollé, P., Mark, M., Dierich, A., Chambon, P. & Rijli, F. M. 1997. In vivo functional analysis of the Hoxa-1 3′ retinoic acid response element (3′RARE). Development 124, 399410.
  • Frazer, K. A., Pachter, L., Poliakov, A., Rubin, E. M. & Dubchak, I. 2004. VISTA: computational tools for comparative genomics. Nucleic Acids Res. 32, W273W279.
  • Fujiwara, S. 2006. Retinoids and non-vertebrate chordate development. J. Neurobiol. 66, 645652.
  • Fujiwara, S. & Kawamura, K. 2003. Acquisition of retinoic acid signaling pathway and innovation of the chordate body plan. Zool. Sci. 20, 809818.
  • Fujiwara, S., Maeda, Y., Shin-I, T., Kohara, Y., Takatori, N., Satou, Y. & Satoh, N. 2002. Gene expression profiles in Ciona intestinalis cleavage-stage embryos. Mech. Dev. 112, 115127.
  • Gavalas, A. & Krumlauf, R. 2000. Retinoid signalling and hindbrain patterning. Curr. Opin. Genet. Dev. 10, 380386.
  • Harafuji, N., Keys, D. N. & Levine, M. 2002. Genome-wide identification of tissue-specific enhancers in the Ciona tadpole. Proc. Natl Acad. Sci. USA 99, 68026805.
  • Huang, D., Chen, S. W. & Gudas, L. J. 2002. Analysis of two distinct retinoic acid response elements in the homeobox gene Hoxb1 in transgenic mice. Dev. Dyn. 223, 353370.
  • Huang, D., Chen, S. W., Langston, A. W. & Gudas, L. J. 1998. A conserved retinoic acid responsive element in the murine Hoxb-1 gene is required for expression in the developing gut. Development 125, 32353246.
  • Ikuta, T. & Saiga, H. 2007. Dynamic change in the expression of developmental genes in the ascidian central nervous system: revisit to the tripartite model and the origin of the midbrain-hindbrain boundary region. Dev. Biol. 312, 631643.
  • Ikuta, T., Yoshida, N., Satoh, N. & Saiga, H. 2004. Ciona intestinalis Hox gene cluster: its dispersed structure and residual collinear expression in development. Proc. Natl Acad. Sci. USA 101, 1511815123.
  • Imai, K. S., Stolfi, A., Levine, M. & Satou, Y. 2009. Gene regulatory networks underlying the compartmentalization of the Ciona central nervous system. Development 136, 285293.
  • Ishibashi, T., Usami, T., Fujie, M., Azumi, K., Satoh, N. & Fujiwra, S. 2005. Oligonucleotide-based microarray analysis of retinoic acid target genes in the protochordate, Ciona intestinalis. Dev. Dyn. 233, 15711578.
  • Kanda, M., Wada, H. & Fujiwra, S. 2009. Epidermal expression of Hox1 is directly activated by retinoic acid in the Ciona intestinalis embryo. Dev. Biol. 335, 454463.
  • Langston, A. W. & Gudas, L. J. 1992. Identification of a retinoic acid responsive enhancer 3′ of the murine homeobox gene Hox-1.6. Mech. Dev. 38, 217227.
  • Langston, A. W., Thompson, J. R. & Gudas, L. J. 1997. Retinoic acid-responsive enhancers located 3′ of the Hox A and Hox B homeobox gene clusters. J. Biol. Chem. 272, 21672175.
  • Lohnes, D., Mark, M., Mendelsohn, C., Dollé, P., Dierich, A., Gorry, P., Gansmuller, A. & Chambon, P. 1994. Function of the retinoic acid receptors (RARs) during development (I). Craniofacial and skeletal abnormalities in RAR double mutants. Development 120, 27232748.
  • Lufkin, T., Dierich, A., LeMeur, M., Mark, M. & Chambon, P. 1991. Disruption of the Hox-1.6 homeobox gene results in defects in a region corresponding to its rostral domain of expression. Cell 66, 11051119.
  • Mainguy, G., In der Rieden, P. M., Berezikov, E., Woltering, J. M., Plasterk, R. H. A. & Durston, A. J. 2003. A position-dependent organisation of retinoid response elements is conserved in the vertebrate Hox clusters. Trends Genet. 19, 476479.
  • Manzanares, M., Wada, H., Itasaki, N., Trainor, P. A., Krumlauf, R. & Holland, P. W. H. 2000. Conservation and elaboration of Hox gene regulation during evolution of the vertebrate head. Nature 408, 854857.
  • Mark, M., Lufkin, T., Vonesch, J. L., Ruberte, E., Olivo, J. C., Dollé, P., Gorry, P., Lumsden, A. & Chambon, P. 1993. Two rhombomeres are altered in Hoxa1 mutant mice. Development 119, 319338.
  • Marlétaz, F., Holland, L. Z., Laudet, V. & Schubert, M. 2006. Retinoic acid signaling and the evolution of chordates. Int. J. Biol. Sci. 2, 3847.
  • Marshall, H., Morrison, A., Studer, M., Pöpperl, H. & Krumlauf, R. 1996. Retinoids and Hox genes. FASEB J. 10, 969978.
  • Marshall, H., Studer, M., Pöpperl, H., Aparicio, S., Kuroiwa, A., Brenner, S. & Krumlauf, R. 1994. A conserved retinoic acid response element required for early expression of the homeobox gene Hoxb-1. Nature 370, 567571.
  • McClintock, J. M., Kheirbek, M. A. & Prince, V. E. 2002. Knockdown of duplicated zebrafish hoxb1 genes reveals distinct roles in hindbrain patterning and a novel mechanism of duplicate gene retention. Development 129, 23392354.
  • Mendelsohn, C., Lohnes, D., Decimo, D., Lufkin, T., LeMeur, M., Chambon, P. & Mark, M. 1994. Function of the retinoic acid receptors (RARs) during development (II). Multiple abnormalities at various stages of organogenesis in RAR double mutants. Development 120, 27492771.
  • Nagatomo, K. & Fujiwara, S. 2003. Expression of Raldh2, Cyp26 and Hox-1 in normal and retinoic acid-treated Ciona intestinalis embryos. Gene Expr. Patterns 3, 273277.
  • Nagatomo, K., Ishibashi, T., Satou, Y., Satoh, N. & Fujiwara, S. 2003. Retinoic acid affects gene expression and morphogenesis without upregulating the retinoic acid receptor in the ascidian Ciona intestinalis. Mech. Dev. 120, 363372.
  • Natale, A., Sims, C., Chiusano, M. L., Amoroso, A., D′Aniello, E., Fucci, L., Krumlauf, R., Branno, M. & Locascio, A. 2011. Evolution of anterior Hox regulatory elements among chordates. BMC Evol. Biol. 11, 330.
  • Niederreither, K., Subbarayan, V., Dollé, P. & Chambon, P. 1999. Embryonic retinoic acid synthesis is essential for early mouse post-implantation development. Nat. Genet. 21, 444448.
  • Ogura, T. & Evans, R. M. 1995a. A retinoic acid-triggered cascade of HOXB1 gene activation. Proc. Natl Acad. Sci. USA 92, 387391.
  • Ogura, T. & Evans, R. M. 1995b. Evidence for two distinct retinoic acid response pathways for HOXB1 gene regulation. Proc. Natl Acad. Sci. USA 92, 392396.
  • Parrish, M., Nolte, C. & Krumlauf, R. 2009. Hox genes expressions. In: Encyclopedia of Neuroscience. (ed. S. LR) Oxford: Academic Press, pp. 12211231.
  • Putnam, N. H., Butts, T., Ferrier, D. E. K., Furlong, R. F., Hellsten, U., Kawashima, T., Robinson -Rechavi, M., Shoguchi, E., Terry, A., Yu, J. K., Benito-Gutiérrez, E. L., Dubchak, I., Garcia -Fernàndez, J., Gibson-Brown, J. J., Grigoriev, I. V., Horton, A. C., de Jong, P. J., Jurka, J., Kapitonov, V. V., Kohara, Y., Kuroki, Y., Lindquist, E., Lucas, S., Osoegawa, K., Pennacchio, L. A., Salamov, A. A., Satou, Y., Sauka-Spengler, T., Schmutz, J., Shin-I, T., Toyoda, A., Bronner-Fraser, M., Fujiyama, A., Holland, L. Z., Holland, P. W. H., Satoh, N. & Rokhsar, D. S. 2008. The amphioxus genome and the evolution of the chordate karyotype. Nature 453, 10641071.
  • Sasakura, Y., Kanda, M., Ikeda, T., Horie, T., Kawai, N., Ogura, Y., Yoshida, R., Hozumi, A., Satoh, N. & Fujiwara, S. 2012. Retinoic acid-driven Hox1 is required in the epidermis for forming the otic/atrial placodes during ascidian metamorphosis. Development 139, 21562160.
  • Satoh, N. & Jeffery, W. R. 1995. Chasing tails in ascidians: developmental insights into the origin and evolution of chordates. Trends Genet. 11, 354359.
  • Satoh, N., Satou, Y., Davidson, B. & Levine, M. 2003. Ciona intestinalis: an emerging model for whole-genome analysis. Trends Genet. 19, 376381.
  • Schubert, M., Holland, N. D., Escriva, H., Holland, L. Z. & Laudet, V. 2004. Retinoic acid influences anteroposterior positioning of epidermal sensory neurons and their gene expression in a developing chordate (amphioxus). Proc. Natl Acad. Sci. USA 101, 1032010325.
  • Schubert, M., Holland, N. D., Laudet, V. & Holland, L. Z. 2006. A retinoic acid-Hox hierarchy controls both anterior/posterior patterning and neuronal specification in the developing central nervous system of the cephalochordate amphioxus. Dev. Biol. 296, 190202.
  • Seo, H. C., Edvardsen, R. B., Maeland, A. D., Bjordal, M., Jensen, M. F., Hansen, A., Flaat, M., Weissenbach, J., Lehrach, H., Wincker, P., Reinhardt, R. & Chourrout, D. 2004. Hox cluster disintegration with persistent anteroposterior order of expression in Oikopleura dioica. Nature 431, 6771.
  • Studer, M., Lumsden, A., Ariza-McNaughton, L., Bradley, A. & Krumlauf, R. 1996. Altered segmental identity and abnormal migration of motor neurons in mice lacking Hoxb1. Nature 384, 630634.
  • Studer, M., Pöpperl, H., Marshall, H., Kuroiwa, A. & Krumlauf, R. 1994. Role of conserved retinoic acid response element in rhombomere restriction of Hoxb-1. Science 256, 17281732.
  • Wada, H., Escriva, H., Zhang, S. & Laudet, V. 2006. Conserved RARE localization in amphioxus Hox clusters and implications for Hox code evolution in the vertebrate neural crest. Dev. Dyn. 235, 15221531.