SEARCH

SEARCH BY CITATION

References

  • Abramoff, M. D., Magalhaes, P. J. & Ram, S. J. 2004. Image processing with ImageJ. Biophot. Int. 11, 3642.
  • Adam, V., Nienhaus, K., Bourgeois, D. & Nienhaus, G. U. 2009. Structural basis of enhanced photoconversion yield in green fluorescent protein-like protein Dendra2. Biochemistry 48, 49054915.
  • Agate, R. J., Scott, B. B., Haripal, B., Lois, C. & Nottebohm, F. 2009. Transgenic songbirds offer an opportunity to develop a genetic model for vocal learning. Proc. Natl Acad. Sci. USA 106, 1796317967.
  • Ainsworth, S. J., Stanley, R. L. & Evans, D. J. 2010. Developmental stages of the Japanese quail. J. Anat. 216, 315.
  • Al-Roubaie, S., Hughes, J. H., Filla, M. B., Lansford, R., Lehoux, S. & Jones, E. A. 2012. Time-lapse microscopy of macrophages during embryonic vascular development. Dev. Dyn. 241, 14231431.
  • Bell, G. W., Yatskievych, T. A. & Antin, P. B. 2004. GEISHA, a whole-mount in situ hybridization gene expression screen in chicken embryos. Dev. Dyn. 229, 677687.
  • Benazeraf, B., Francois, P., Baker, R. E., Denans, N., Little, C. D. & Pourquie, O. 2010. A random cell motility gradient downstream of FGF controls elongation of an amniote embryo. Nature 466, 248252.
  • Bienkowska-Szewczyk, K. & Ehrenfeld, E. 1988. An internal 5′-noncoding region required for translation of poliovirus RNA in vitro. J. Virol. 62, 30683072.
  • Bower, D. V., Sato, Y. & Lansford, R. 2011. Dynamic lineage analysis of embryonic morphogenesis using transgenic quail and 4D multispectral imaging. Genesis 49, 619643.
  • Brown, C. T. 2008. Computational approaches to finding and analyzing cis-regulatory elements. Methods Cell Biol. 87, 337365.
  • Byun, S. J., Kim, S. W., Kim, K. W., Kim, J. S., Hwang, I. S., Chung, H. K., Kan, I. S., Jeon, I. S., Chang, W. K., Park, S. B. & Yoo, J. G. 2011. Oviduct-specific enhanced green fluorescent protein expression in transgenic chickens. Biosci. Biotechnol. Biochem. 75, 646649.
  • Canaria, C. A. & Lansford, R. 2011a. 4D fluorescent imaging of embryonic quail development. Cold Spring Harb. Protoc. 2011, 12911294.
  • Canaria, C. A. & Lansford, R. 2011b. Preparation and 4D fluorescent imaging of quail embryos. Cold Spring Harb. Protoc. 2011, 13751382.
  • Chapman, S. C., Collignon, J., Schoenwolf, G. C. & Lumsden, A. 2001. Improved method for chick whole-embryo culture using a filter paper carrier. Dev. Dyn. 220, 284289.
  • Chapman, S. C., Lawson, A., MacArthur, W. C., Wiese, R. J., Loechel, R. H., Burgos-Trinidad, M., Wakefield, J. K., Ramabhadran, R., Mauch, T. J. & Schoenwolf, G. C. 2005. Ubiquitous GFP expression in transgenic chickens using a lentiviral vector. Development 132, 935940.
  • Chudakov, D. M., Matz, M. V., Lukyanov, S. & Lukyanov, K. A. 2010. Fluorescent proteins and their applications in imaging living cells and tissues. Physiol. Rev. 90, 11031163.
  • Denk, W., Strickler, J. H. & Webb, W. W. 1990. Two-photon laser scanning fluorescence microscopy. Science 248, 7376.
  • De Palma, M., Venneri, M. A. & Naldini, L. 2003. In vivo targeting of tumor endothelial cells by systemic delivery of lentiviral vectors. Hum. Gene Ther. 14, 11931206.
  • Dittgen, T., Nimmerjahn, A., Komai, S., Licznerski, P., Waters, J., Margrie, T. W., Helmchen, F., Denk, W., Brecht, M. & Osten, P. 2004. Lentivirus-based genetic manipulations of cortical neurons and their optical and electrophysiological monitoring in vivo. Proc. Natl Acad. Sci. USA 101, 1820618211.
  • Donnelly, M. L., Hughes, L. E., Luke, G., Mendoza, H., Ten Dam, E., Gani, D. & Ryan, M. D. 2001. The ‘cleavage’ activities of foot-and-mouth disease virus 2A site-directed mutants and naturally occurring ‘2A-like’ sequences. J. Gen. Virol. 82, 10271041.
  • Ezin, M. & Fraser, S. 2008. Time-lapse imaging of the early avian embryo. Methods Cell Biol. 87, 211236.
  • Fang, J., Qian, J. J., Yi, S., Harding, T. C., Tu, G. H., Vanroey, M. & Jooss, K. 2005. Stable antibody expression at therapeutic levels using the 2A peptide. Nat. Biotechnol. 23, 584590.
  • Feng, G., Mellor, R. H., Bernstein, M., Keller-Peck, C., Nguyen, Q. T., Wallace, M., Nerbonne, J. M., Lichtman, J. W. & Sanes, J. R. 2000. Imaging neuronal subsets in transgenic mice expressing multiple spectral variants of GFP. Neuron 28, 4151.
  • Funahashi, J., Okafuji, T., Ohuchi, H., Noji, S., Tanaka, H. & Nakamura, H. 1999. Role of Pax-5 in the regulation of a mid-hindbrain organizer's activity. Dev. Growth Differ. 41, 5972.
  • Gros, J., Serralbo, O. & Marcelle, C. 2009. WNT11 acts as a directional cue to organize the elongation of early muscle fibres. Nature 457, 589593.
  • Gurskaya, N. G., Verkhusha, V. V., Shcheglov, A. S., Staroverov, D. B., Chepurnykh, T. V., Fradkov, A. F., Lukyanov, S. & Lukyanov, K. A. 2006. Engineering of a monomeric green-to-red photoactivatable fluorescent protein induced by blue light. Nat. Biotechnol. 24, 461465.
  • Hadjantonakis, A. K., MacMaster, S. & Nagy, A. 2002. Embryonic stem cells and mice expressing different GFP variants for multiple non-invasive reporter usage within a single animal. BMC Biotechnol. 2, 11.
  • Hamburger, V. & Hamilton, H. L. 1992. A series of normal stages in the development of the chick embryo. 1951. Dev. Dyn. 195, 231272.
  • Hilgers, V., Pourquie, O. & Dubrulle, J. 2005. In vivo analysis of mRNA stability using the Tet-Off system in the chicken embryo. Dev. Biol. 284, 292300.
  • Huss, D., Poynter, G. & Lansford, R. 2008. Japanese quail (Coturnix japonica) as a laboratory animal model. Lab Anim. 37, 513519.
  • Hutter, H. 2004. Five-colour in vivo imaging of neurons in Caenorhabditis elegans. J. Microsc. 215, 213218.
  • International Chicken Genome Sequencing Consortium, I. C. G. S 2004. Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution. Nature 432, 695716.
  • Itasaki, N. & Nakamura, H. 1996. A role for gradient en expression in positional specification on the optic tectum. Neuron 16, 5562.
  • Itasaki, N., Bel-Vialar, S. & Krumlauf, R. 1999. ‘Shocking’ developments in chick embryology: electroporation and in ovo gene expression. Nat. Cell Biol. 1, E203E207.
  • Jang, S. K., Krausslich, H. G., Nicklin, M. J., Duke, G. M., Palmenberg, A. C. & Wimmer, E. 1988. A segment of the 5′ nontranslated region of encephalomyocarditis virus RNA directs internal entry of ribosomes during in vitro translation. J. Virol. 62, 26362643.
  • Jones, E. A., Crotty, D., Kulesa, P. M., Waters, C. W., Baron, M. H., Fraser, S. E. & Dickinson, M. E. 2002. Dynamic in vivo imaging of postimplantation mammalian embryos using whole embryo culture. Genesis 34, 228235.
  • Kasemeier-Kulesa, J. C., Bradley, R., Pasquale, E. B., Lefcort, F. & Kulesa, P. M. 2006. Eph/ephrins and N-cadherin coordinate to control the pattern of sympathetic ganglia. Development 133, 48394847.
  • Kamihira, M., Ono, K., Esaka, K., Nishijima, K., Kigaku, R., Komatsu, H., Yamashita, T., Kyogoku, K. & Iijima, S. 2005. High-level expression of single-chain Fv-Fc fusion protein in serum and egg white of genetically manipulated chickens by using a retroviral vector. J. Virol. 79, 1086410874.
  • Kanda, T., Sullivan, K. F. & Wahl, G. M. 1998. Histone-GFP fusion protein enables sensitive analysis of chromosome dynamics in living mammalian cells. Curr. Biol. 8, 377385.
  • Katahira, T. & Nakamura, H. 2003. Gene silencing in chick embryos with a vector-based small interfering RNA system. Dev. Growth Differ. 45, 361367.
  • Keller, P. J., Schmidt, A. D., Wittbrodt, J. & Stelzer, E. H. 2008. Reconstruction of zebrafish early embryonic development by scanned light sheet microscopy. Science 322, 10651069.
  • Keller, P. J. & Stelzer, E. H. 2010. Digital scanned laser light sheet fluorescence microscopy. Cold Spring Harb. Protoc. 2010, pdb top78.
  • Kidokoro, H., Okabe, M. & Tamura, K. 2008. Time-lapse analysis reveals local asymmetrical changes in C-looping heart tube. Dev. Dyn. 237, 35453556.
  • Kimura, W., Yasugi, S., Stern, C. D. & Fukuda, K. 2006. Fate and plasticity of the endoderm in the early chick embryo. Dev. Biol. 289, 283295.
  • Kondoh, H. & Uchikawa, M. 2008. Dissection of chick genomic regulatory regions. Methods Cell Biol. 87, 313336.
  • Koo, B. C., Kwon, M. S., Choi, B. R., Kim, J. H., Cho, S. K., Sohn, S. H., Cho, E. J., Lee, H. T., Chang, W., Jeon, I., Park, J. K., Park, J. B. & Kim, T. 2006. Production of germline transgenic chickens expressing enhanced green fluorescent protein using a MoMLV-based retrovirus vector. FASEB J. 20, 22512260.
  • Krull, C. E., Lansford, R., Gale, N. W., Collazo, A., Marcelle, C., Yancopoulos, G. D., Fraser, S. E. & Bronner-Fraser, M. 1997. Interactions of Eph-related receptors and ligands confer rostrocaudal pattern to trunk neural crest migration. Curr. Biol. 7, 571580.
  • Kulesa, P. M., Bailey, C. M., Cooper, C. & Fraser, S. E. 2010a. In ovo live imaging of avian embryos. Cold Spring Harb. Protoc. 2010, pdb prot5446.
  • Kulesa, P. M. & Fraser, S. E. 2000. In ovo time-lapse analysis of chick hindbrain neural crest cell migration shows cell interactions during migration to the branchial arches. Development 127, 11611172.
  • Kulesa, P. M. & Fraser, S. E. 2002. Cell dynamics during somite boundary formation revealed by time-lapse analysis. Science 298, 991995.
  • Kulesa, P. M. & Kasemeier-Kulesa, J. C. 2007. Construction of a heated incubation chamber around a microscope stage for time-lapse imaging. Cold Spring Harb. Protoc. 2007, pdb prot4792.
  • Kulesa, P. M., Stark, D. A., Steen, J., Lansford, R. & Kasemeier-Kulesa, J. C. 2009. Watching the assembly of an organ a single cell at a time using confocal multi-position photoactivation and multi-time acquisition. Organogenesis 5, 238247.
  • Kulesa, P. M., Teddy, J. M., Smith, M., Alexander, R., Cooper, C. H., Lansford, R. & McLennan, R. 2010b. Multispectral fingerprinting for improved in vivo cell dynamics analysis. BMC Dev. Biol. 10, 101.
  • Kwon, S. C., Choi, J. W., Jang, H. J., Shin, S. S., Lee, S. K., Park, T. S., Choi, I. Y., Lee, G. S., Song, G. & Han, J. Y. 2010. Production of biofunctional recombinant human interleukin 1 receptor antagonist (rhIL1RN) from transgenic quail egg white. Biol. Reprod. 82, 10571064.
  • Lansford, R., Bearman, G. & Fraser, S. E. 2001. Resolution of multiple green fluorescent protein color variants and dyes using two-photon microscopy and imaging spectroscopy. J. Biomed. Opt. 6, 311318.
  • Larue, A. C., Lansford, R. & Drake, C. J. 2003. Circulating blood island-derived cells contribute to vasculogenesis in the embryo proper. Dev. Biol. 262, 162172.
  • Liebling, M., Forouhar, A. S., Gharib, M., Fraser, S. E. & Dickinson, M. E. 2005. Four-dimensional cardiac imaging in living embryos via postacquisition synchronization of nongated slice sequences. J. Biomed. Opt. 10, 054001.
  • Lillico, S. G., Sherman, A., McGrew, M. J., Robertson, C. D., Smith, J., Haslam, C., Barnard, P., Radcliffe, P. A., Mitrophanous, K. A., Elliot, E. A. & Sang, H. M. 2007. Oviduct-specific expression of two therapeutic proteins in transgenic hens. Proc. Natl Acad. Sci. USA 104, 17711776.
  • Livet, J., Weissman, T. A., Kang, H., Draft, R. W., Lu, J., Bennis, R. A., Sanes, J. R. & Lichtman, J. W. 2007. Transgenic strategies for combinatorial expression of fluorescent proteins in the nervous system. Nature 450, 5662.
  • Lyall, J., Irvine, R. M., Sherman, A., McKinley, T. J., Nunez, A., Purdie, A., Outtrim, L., Brown, I. H., Rolleston-Smith, G., Sang, H. & Tiley, L. 2011. Suppression of avian influenza transmission in genetically modified chickens. Science 331, 223226.
  • MacDonald, J., Taylor, L., Sherman, A., Kawakami, K., Takahashi, Y., Sang, H. M. & McGrew, M. J. 2012. Efficient genetic modification and germ-line transmission of primordial germ cells using piggyBac and Tol2 transposons. Proc. Natl Acad. Sci. USA 109, E1466E1472.
  • McGrew, M. J., Sherman, A., Ellard, F. M., Ellard, F. M., Lillico, S. G., Gilhooley, H. J., Kingsman, A. J., Mitrophanous, K. A. & Sang, H. 2004. Efficient production of germline transgenic chickens using lentiviral vectors. EMBO Rep. 5, 728733.
  • McKinney, S. A., Murphy, C. S., Hazelwood, K. L., Davidson, M. W. & Looger, L. L. 2009. A bright and photostable photoconvertible fluorescent protein. Nat. Methods 6, 131133.
  • Mizuarai, S., Ono, K., Yamaguchi, K., Nishijima, K., Kamihira, M. & Iijima, S. 2001. Production of transgenic quails with high frequency of germ-line transmission using VSV-G pseudotyped retroviral vector. Biochem. Biophys. Res. Commun. 286, 456463.
  • Motono, M., Yamada, Y., Hattori, Y., Nakagawa, R., Nishijima, K. & Iijima, S. 2010. Production of transgenic chickens from purified primordial germ cells infected with a lentiviral vector. J. Biosci. Bioeng. 109, 315321.
  • Mozdziak, P. E. & Petitte, J. N. 2004. Status of transgenic chicken models for developmental biology. Dev. Dyn. 229, 414421.
  • New, D. 1955. A new technique for the cultivation of the chick embryo in vitro. J. Embryol. Exp. Morphol. 3, 320331.
  • Pantazis, P. & Gonzalez-Gaitan, M. 2007. Localized multiphoton photoactivation of paGFP in Drosophila wing imaginal discs. J. Biomed. Opt. 12, 044004.
  • Park, T. S. & Han, J. Y. 2012. piggyBac transposition into primordial germ cells is an efficient tool for transgenesis in chickens. Proc. Natl Acad. Sci. USA 109, 93379341.
  • Patterson, G. H. 2008. Photoactivation and imaging of photoactivatable fluorescent proteins. Curr. Protoc. Cell Biol. Chapter 21, Unit 21–26.
  • Penno, C. A., Kawabe, Y., Ito, A. & Kamihira, M. 2010. Production of recombinant human erythropoietin/Fc fusion protein by genetically manipulated chickens. Transgenic Res. 19, 187195.
  • Petitte, J. N., Liu, G. & Yang, Z. 2004. Avian pluripotent stem cells. Mech. Dev. 121, 11591168.
  • Poynter, G., Huss, D. & Lansford, R. 2009a. Generation of high-titer lentivirus for the production of transgenic quail. Cold Spring Harb. Protoc. 2009, pdb prot5117.
  • Poynter, G., Huss, D. & Lansford, R. 2009b. Injection of lentivirus into stage-X blastoderm for the production of transgenic quail. Cold Spring Harb. Protoc. 2009, pdb prot5118.
  • Poynter, G., Huss, D. & Lansford, R. 2009c. Japanese quail: an efficient animal model for the production of transgenic avians. Cold Spring Harb. Protoc. 2009, pdb emo112.
  • Poynter, G., Huss, D. & Lansford, R. 2009d. Screening for transgenic Japanese quail offspring. Cold Spring Harb. Protoc. 2009, pdb prot5119.
  • Ruffins, S. W., Martin, M., Keough, L., Truong, S., Fraser, S. E., Jacobs, R. E. & Lansford, R. 2007. Digital three-dimensional atlas of quail development using high-resolution MRI. ScientificWorldJournal 7, 592604.
  • Rupp, P. A., Czirok, A. & Little, C. D. 2004. Alphavbeta3 integrin-dependent endothelial cell dynamics in vivo. Development 131, 28872897.
  • Rupp, P. A., Rongish, B. J., Czirok, A. & Little, C. D. 2003. Culturing of avian embryos for time-lapse imaging. Biotechniques 34, 274278.
  • Ryan, M. D. & Drew, J. 1994. Foot-and-mouth disease virus 2A oligopeptide mediated cleavage of an artificial polyprotein. EMBO J. 13, 928933.
  • Sang, H. 2004. Prospects for transgenesis in the chick. Mech. Dev. 121, 11791186.
  • Sato, Y., Poynter, G., Huss, D., Filla, M. B., Czirok, A., Rongish, B. J., Little, C. D., Fraser, S. E. & Lansford, R. 2010. Dynamic analysis of vascular morphogenesis using transgenic quail embryos. PLoS One 5, e12674.
  • Sauka-Spengler, T. & Barembaum, M. 2008. Gain- and loss-of-function approaches in the chick embryo. Methods Cell Biol., 87, 237256.
  • Schindelin, J., Arganda-Carreras, I., Frise, E., Kaynig, V., Longair, M., Pietzsch, T., Preibisch, S., Rueden, C., Saalfeld, S., Schmid, B., Tinevez, J. Y., White, D. J., Hartenstein, V., Eliceiri, K., Tomancak, P. & Cardona, A. 2012. Fiji: an open-source platform for biological-image analysis. Nat. Methods 9, 676682.
  • Scott, B. B. & Lois, C. 2005. Generation of tissue-specific transgenic birds with lentiviral vectors. Proc. Natl Acad. Sci. USA 102, 1644316447.
  • Scott, B. B. & Lois, C. 2006. Generation of transgenic birds with replication-deficient lentiviruses. Nat. Protoc. 1, 14061411.
  • Seidl, A. H., Sanchez, J. T., Schecterson, L., Tabor, K. M., Wang, Y., Kashima, D. T., Poynter, G., Huss, D., Fraser, S. E., Lansford, R. & Rubel, E. W. 2013. Transgenic quail as a model for research in the avian nervous system - a comparative study of the auditory brainstem. J. Comp. Neurol. 521, 523.
  • Shaner, N. C., Steinbach, P. A. & Tsien, R. Y. 2005. A guide to choosing fluorescent proteins. Nat. Methods 2, 905909.
  • Sheng, G., Dos Reis, M. & Stern, C. D. 2003. Churchill, a zinc finger transcriptional activator, regulates the transition between gastrulation and neurulation. Cell 115, 603613.
  • Shin, S. S., Kim, T. M., Kim, S. Y., Seo, H. W., Lee, S. K., Kwon, S. C., Lee, G. S., Kim, H., Lim, J. M. & Han, J. Y. 2008. Generation of transgenic quail through germ cell-mediated germline transmission. FASEB J. 22, 24352444.
  • Stark, D. A. & Kulesa, P. M. 2007. An in vivo comparison of photoactivatable fluorescent proteins in an avian embryo model. Dev. Dyn. 236, 15831594.
  • Stern, C. D. 2004. The chick embryo–past, present and future as a model system in developmental biology. Mech. Dev. 121, 10111013.
  • Stern, C. D., Fraser, S. E., Keynes, R. J. & Primmett, D. R. 1988. A cell lineage analysis of segmentation in the chick embryo. Development 104(Suppl), 231244.
  • Teddy, J. M., Lansford, R. & Kulesa, P. M. 2005. Four-color, 4-D time-lapse confocal imaging of chick embryos. Biotechniques 39, 703710.
  • Thévenaz, P., Ruttimann, U. E. & Unser, M. 1998. A pyramid approach to subpixel registration based on intensity. IEEE Trans. Image Process. 7, 2741.
  • Truong, T. V., Supatto, W., Koos, D. S., Choi, J. M. & Fraser, S. E. 2011. Deep and fast live imaging with two-photon scanned light-sheet microscopy. Nat. Methods 8, 757760.
  • Uchikawa, M., Ishida, Y., Takemoto, T., Kamachi, Y. & Kondoh, H. 2003. Functional analysis of chicken Sox2 enhancers highlights an array of diverse regulatory elements that are conserved in mammals. Dev. Cell 4, 509519.
  • Van De Lavoir, M. C., Diamond, J. H., Leighton, P. A., Mather-Love, C., Heyer, B. S., Bradshaw, R., Kerchner, A., Hooi, L. T., Gessaro, T. M., Swanberg, S. E., Delany, M. E. & Etches, R. J. 2006. Germline transmission of genetically modified primordial germ cells. Nature 441, 766769.
  • Watanabe, T., Saito, D., Tanabe, K., Suetsugu, R., Nakaya, Y., Nakagawa, S. & Takahashi, Y. 2007. Tet-on inducible system combined with in ovo electroporation dissects multiple roles of genes in somitogenesis of chicken embryos. Dev. Biol. 305, 625636.
  • Williams, R. M., Piston, D. W. & Webb, W. W. 1994. Two-photon molecular excitation provides intrinsic 3-dimensional resolution for laser-based microscopy and microphotochemistry. FASEB J. 8, 804813.
  • Woolfe, A., Goodson, M., Goode, D. K., Snell, P., McEwen, G. K., Vavouri, T., Smith, S. F., North, P., Callaway, H., Kelly, K., Walter, K., Abnizova, I., Gilks, W., Edwards, Y. J., Cooke, J. E. & Elgar, G. 2005. Highly conserved non-coding sequences are associated with vertebrate development. PLoS Biol. 3, e7.
  • Yamagata, M., Jaye, D. L. & Sanes, J. R. 1994. Gene transfer to avian embryos with a recombinant adenovirus. Dev. Biol. 166, 355359.