SEARCH

SEARCH BY CITATION

References

  • Ambros, V. 2001. microRNAs: tiny regulators with great potential. Cell 107, 823826.
  • Barritt, L. C., Miller, J. M., Scheetz, L. R., Gardner, K., Pierce, M.L., Soukup, G. A. & Rocha-Sanchez, S. M. 2012. Conditional deletion of the human ortholog gene Dicer1 in Pax2-Cre expression domain impairs orofacial development. Indian J. Hum. Genet. 18, 310319.
  • Bartel, D. P. 2009. MicroRNAs: target recognition and regulatory functions. Cell 136, 215233.
  • Bazzini, A. A., Lee, M. T. & Giraldez, A. J. 2012. Ribosome profiling shows that miR-430 reduces translation before causing mRNA decay in zebrafish. Science 336, 233237.
  • Benjamini, Y. & Hochberg, Y. 1995. Controlling the false discovery rate: a practical and powerful approach to multiple testing. J. R. Stat. Soc. B 57, 289300.
  • Charoenchaikorn, K., Yokomizo, T., Rice, D. P., Honjo, T., Matsuzaki, K., Shintaku, Y., Imai, Y., Wakamatsu, A., Takahashi, S., Ito, Y., Takano-Yamamoto, T., Thesleff, I., Yamamoto, M. & Yamashiro, T. 2009. Runx1 is involved in the fusion of the primary and the secondary palatal shelves. Dev. Biol. 326, 392402.
  • Chen, J., Tran, U. M., Rajarajacholan, U., Thalappilly, S. & Riabowol, K. 2013. ING1b-inducible microRNA203 inhibits cell proliferation. Br. J. Cancer 108, 11431148.
  • Chiquet, B. T., Blanton, S. H., Burt, A., Ma, D., Stal, S., Mulliken, J. B. & Hecht, J. T. 2008. Variation in WNT genes is associated with non-syndromic cleft lip with or without cleft palate. Hum. Mol. Genet. 17, 22122218.
  • Darnell, D. K., Kaur, S., Stanislaw, S., Konieczka, J. H., Yatskievych, T. A. & Antin, P. B. 2006. MicroRNA expression during chick embryo development. Dev. Dyn. 235, 31563165.
  • De Pontual, L., Yao, E., Callier, P., Faivre, L., Drouin, V., Cariou, S., Van Haeringen, A., Geneviève, D., Goldenberg, A., Oufadem, M., Manouvrier, S., Munnich, A., Vidigal, J. A., Vekemans, M., Lyonnet, S., Henrion-Caude, A., Ventura, A. & Amiel, J. 2011. Germline deletion of the miR-17 approximately 92 cluster causes skeletal and growth defects in humans. Nat. Genet. 43, 10261030.
  • Ding, X., Park, S. I., Mccauley, L. K. & Wang, C. Y. 2013. Signaling between TGF-β and transcription factor SNAI2 represses expression of microRNA miR-203 to promote epithelial-mesenchymal transition and tumor metastasis. J. Biol. Chem. 288, 1024110253.
  • Djuranovic, S., Nahvi, A. & Green, R. 2012. MiRNA-mediated gene silencing by translational repression followed by mRNA deadenylation and decay. Science 336, 237240.
  • Eberhart, J. K., He, X., Swartz, M. E., Yan, Y. L., Song, H., Boling, T. C., Kunerth, A. K., Walker, M. B., Kimmel, C. B. & Postlethwait, J. H. 2008. MicroRNA Mirn140 modulates Pdgf signaling during palatogenesis. Nat. Genet. 40, 290298.
  • Eppley, B. L., Van Aalst, J. A., Robey, A., Havlik, R. J. & Sadove, A. M. 2005. The spectrum of orofacial clefting. Plast. Reconstr. Surg. 115, 101e114e.
  • Feng, W., Leach, S. M., Tipney, H., Phang, T., Geraci, M., Spritz, R. A., Hunter, L. E & Williams, T. 2009. Spatial and temporal analysis of gene expression during growth and fusion of the mouse facial prominences. PLoS ONE 4, e8066.
  • Ferretti, E., Li, B., Zewdu, R., Wells, V., Hebert, J. M., Karner, C., Anderson, M. J., Williams, T., Dixon, J., Dixon, M. J., Depew, M. J. & Selleri, L. 2011. A conserved Pbx-Wnt-p63-Irf6 regulatory module controls face morphogenesis by promoting epithelial apoptosis. Dev. Cell 21, 627641.
  • Fjose, A. & Zhao, X. F. 2010. Inhibition of the microRNA pathway in zebrafish by siRNA. Methods Mol. Biol. 629, 239255.
  • Gatto, S., Della Ragione, F., Cimmino, A., Strazzullo, M., Fabbri, M., Mutarelli, M., Ferraro, L., Weisz, A., D'Esposito, M. & Matarazzo, M. R. 2010. Epigenetic alteration of microRNAs in DNMT3B-mutated patients of ICF syndrome. Epigenetics 5, 427443.
  • Gentleman, R. C., Carey, V. J., Bates, D. M., Bolstad, B., Dettling, M., Dudoit, S., Ellis, B., Gautier, L., Ge, Y., Gentry, J., Hornik, K., Hothorn, T., Huber, W., Iacus, S., Irizarry, R., Leisch, F., Li, C., Maechler, M., Rossini, A. J., Sawitzki, G., Smith, C., Smyth, G., Tierney, L., Yang, J. Y. & Zhang, J. 2004. Bioconductor: open software development for computational biology and bioinformatics. Genome Biol. 5, R80.
  • Gessert, S., Bugner, V., Tecza, A., Pinker, M. & Kuhl, M. 2010. FMR1/FXR1 and the miRNA pathway are required for eye and neural crest development. Dev. Biol. 341, 222235.
  • Hu, X., Guo, J., Zheng, L., Tanyi, J. L., Liang, S., Benedetto, C., Mitidieri, M., Katsaros, D., Zhao, X., Zhang, Y., Huang, Q. & Zhang, L. 2013. The heterochronic microRNA let-7 inhibits cell motility by regulating the genes in the actin cytoskeleton pathway in breast cancer. Mol. Cancer Res. 11, 240250.
  • Ingraham, C. R., Kinoshita, A., Kondo, S., Yang, B., Sajan, S., Trout, K. J., Malik, M. I., Dunnwald, M., Goudy, S. L., Lovett, M., Murray, J. C. & Schutte, B. C. 2006. Abnormal skin, limb and craniofacial morphogenesis in mice deficient for interferon regulatory factor 6 (Irf6). Nat. Genet. 38, 13351340.
  • Ivey, K. N. & Srivastava, D. 2010. MicroRNAs as regulators of differentiation and cell fate decisions. Cell Stem Cell 7, 3641.
  • Izzo, G., Freitas, E. L., Krepischi, A. C., Pearson, P. L., Vasques, L. R., Passos-Bueno, M. R., Bertola, D. R. & Rosenberg, C. 2013. A microduplication of 5p15.33 reveals CLPTM1L as a candidate gene for cleft lip and palate. Eur. J. Med. Genet. 56, 222225.
  • Jiang, R., Bush, J. O. & Lidral, A. C. 2006. Development of the upper lip: morphogenetic and molecular mechanisms. Dev. Dyn. 235, 11521166.
  • Jin, Y. R., Han, X. H., Taketo, M. M. & Yoon, J. K. 2012. Wnt9b-dependent FGF signaling is crucial for outgrowth of the nasal and maxillary processes during upper jaw and lip development. Development 139, 18211830.
  • Johnson, C. D., Esquela-Kerscher, A., Stefani, G., Byrom, M., Kelnar, K., Ovcharenko, D., Wilson, M., Wang, X., Shelton, J., Shingara, J., Chin, L., Brown, D. & Slack, F.J. 2007. The let-7 microRNA represses cell proliferation pathways in human cells. Cancer Res. 67, 77137722.
  • Kloosterman, W. P., Wienholds, E., De Bruijn, E., Kauppinen, S. & Plasterk, R. H. 2006. In situ detection of miRNAs in animal embryos using LNA-modified oligonucleotide probes. Nat. Methods 3, 2729.
  • Liu, Y., El-Naggar, S., Darling, D. S., Higashi, Y. & Dean, D. C. 2008. Zeb1 links epithelial-mesenchymal transition and cellular senescence. Development 135, 579588.
  • Livak, K. J. & Schmittgen, T. D. 2001. Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method. Methods 25, 402408.
  • Medawar, A., Virolle, T., Rostagno, P., de la Forest-Divonne, S., Gambaro, K., Rouleau, M. & Aberdam, D 2008. DeltaNp63 is essential for epidermal commitment of embryonic stem cells. PLoS ONE 3, e3441.
  • Melton, C., Judson, R. L. & Blelloch, R. 2010. Opposing microRNA families regulate self-renewal in mouse embryonic stem cells. Nature 463, 621626.
  • Moretti, F., Marinari, B., Lo Iacono, N., Botti, E., Giunta, A., Spallone, G., Garaffo, G., Vernersson-Lindahl, E., Merlo, G., Mills, A.A., Ballarò, C., Alemà, S., Chimenti, S., Guerrini, L. & Costanzo, A 2010. A regulatory feedback loop involving p63 and IRF6 links the pathogenesis of 2 genetically different human ectodermal dysplasias. J. Clin. Invest. 120, 15701577.
  • Mukhopadhyay, P., Brock, G., Pihur, V., Webb, C., Pisano, M. M. & Greene, R. M. 2010. Developmental microRNA expression profiling of murine embryonic orofacial tissue. Birth Defects Res. A Clin. Mol. Teratol. 88, 511534.
  • Nakatomi, M., Wang, X. P., Key, D., Lund, J. J., Turbe-Doan, A., Kist, R., Aw, A., Chen, Y., Maas, R. L. & Peters, H. 2010. Genetic interactions between Pax9 and Msx1 regulate lip development and several stages of tooth morphogenesis. Dev. Biol. 340, 438449.
  • Nissan, X., Denis, J. A., Saidani, M., Lemaitre, G., Peschanski, M. & Baldeschi, C. 2011. MiR-203 modulates epithelial differentiation of human embryonic stem cells towards epidermal stratification. Dev. Biol. 356, 506515.
  • Powder, K. E., Ku, Y. C., Brugmann, S. A., Veile, R. A., Renaud, N. A., Helms, J. A. & Lovett, M. 2012. A cross-species analysis of microRNAs in the developing avian face. PLoS ONE 7, e35111.
  • Radhakrishna, U. 2012. Small players with a big role: MicroRNAs in pathophysiology of cleft lip and palate. Indian J. Hum. Genet. 18, 272273.
  • Rahimov, F., Jugessur, A. & Murray, J. C. 2012. Genetics of nonsyndromic orofacial clefts. Cleft Palate Craniofac. J. 49, 7391.
  • Reinhart, B. J., Slack, F. J., Basson, M., Pasquinelli, A. E., Bettinger, J. C., Rougvie, A. E., Horvitz, H. R. & Ruvkun, G. 2000. The 21-nucleotide let-7 RNA regulates developmental timing in Caenorhabditis elegans. Nature 403, 901906.
  • Rougvie, A. E. 2001. Control of developmental timing in animals. Nat. Rev. Genet. 2, 690701.
  • Sandell, L. L., Kurosaka, H. & Trainor, P. A. 2012. Whole mount nuclear fluorescent imaging: convenient documentation of embryo morphology. Genesis 50, 844850.
  • Sheehy, N. T., Cordes, K. R., White, M. P., Ivey, K. N. & Srivastava, D. 2010. The neural crest-enriched microRNA miR-452 regulates epithelial-mesenchymal signaling in the first pharyngeal arch. Development 137, 43074316.
  • Slack, J. M. S. 2012. Essential Developmental Biology. Oxford : Wiley-Blackwell.
  • Smyth, G. 2005. Limma: linear models for microarray data. Bioinformatics and Computational Biology Solutions using R and Bioconductor (eds R Gentleman, V Carey, S Dudoit, R Irizarry & W Huber), pp. 397420, New York: Springer.
  • Stuppia, L., Capogreco, M., Marzo, G., La Rovere, D., Antonucci, I., Gatta, V., Palka, G., Mortellaro, C. & Tetè, S. 2011. Genetics of syndromic and nonsyndromic cleft lip and palate. J. Craniofac. Surg. 22, 17221726.
  • Thomason, H. A., Dixon, M. J. & Dixon, J. 2008. Facial clefting in Tp63 deficient mice results from altered Bmp4, Fgf8 and Shh signaling. Dev. Biol. 321, 273282.
  • Troyanskaya, O., Cantor, M., Sherlock, G., Brown, P., Hastie, T., Tibshirani, R., Botstein, D. & Altman, R. B. 2001. Missing value estimation methods for DNA microarrays. Bioinformatics 17, 520525.
  • Vergoulis, T., Vlachos, I. S., Alexiou, P., Georgakilas, G., Maragkakis, M., Reczko, M., Gerangelos, S., Koziris, N., Dalamagas, T. & Hatzigeorgiou, A. G. 2012. TarBase 6.0: capturing the exponential growth of miRNA targets with experimental support. Nucleic Acids Res. 40, D222D229.
  • Wang, J., Bai, Y., Li, H., Greene, S.B., Klysik, E., Yu, W., Schwartz, R. J., Williams, T. J. & Martin, J. F. 2013. MicroRNA-17-92, a direct Ap-2alpha transcriptional target, modulates T-box factor activity in orofacial clefting. PLoS Genet. 9, e1003785.
  • Wang, J., Greene, S. B., Bonilla-Claudio, M., Tao, Y., Zhang, J., Bai, Y., Huang, Z., Black, B. L., Wang, F. & Martin, J. F. 2010. Bmp signaling regulates myocardial differentiation from cardiac progenitors through a MicroRNA-mediated mechanism. Dev. Cell 19, 903912.
  • Xiong, W., He, F., Morikawa, Y., Yu, X., Zhang, Z., Lan, Y., Jiang, R., Cserjesi, P. & Chen, Y. 2009. Hand2 is required in the epithelium for palatogenesis in mice. Dev. Biol. 330, 131141.
  • Yang, A., Kaghad, M., Wang, Y., Gillett, E., Fleming, M. D., Dötsch, V., Andrews, N. C., Caput, D. & McKeon, F. 1998. p63, a p53 homolog at 3q27-29, encodes multiple products with transactivating, death-inducing, and dominant-negative activities. Mol. Cell 2, 305316.
  • Zehir, A., Hua, L. L., Maska, E. L., Morikawa, Y. & Cserjesi, P. 2010. Dicer is required for survival of differentiating neural crest cells. Dev. Biol. 340, 459467.
  • Zirzow, S., Ludtke, T. H., Brons, J. F., Petry, M., Christoffels, V. M. & Kispert, A. 2009. Expression and requirement of T-box transcription factors Tbx2 and Tbx3 during secondary palate development in the mouse. Dev. Biol. 336, 145155.