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Environmental Microbiology

© Society for Applied Microbiology and John Wiley & Sons Ltd

Cover image for Vol. 8 Issue 4

April 2006

Volume 8, Issue 4

Pages 569–760

  1. Genomics update

    1. Top of page
    2. Genomics update
    3. Research articles
    4. Brief reports
    5. Correspondence
    6. Web alert
    1. The minimal genome keeps growing (pages 569–573)

      Michael Y. Galperin

      Article first published online: 8 MAR 2006 | DOI: 10.1111/j.1462-2920.2006.01021.x

  2. Research articles

    1. Top of page
    2. Genomics update
    3. Research articles
    4. Brief reports
    5. Correspondence
    6. Web alert
    1. Microbiological investigation of methane- and hydrocarbon-discharging mud volcanoes in the Carpathian Mountains, Romania (pages 574–590)

      Karine Alain, Thomas Holler, Florin Musat, Marcus Elvert, Tina Treude and Martin Krüger

      Article first published online: 31 OCT 2005 | DOI: 10.1111/j.1462-2920.2005.00922.x

    2. The m-xylene biodegradation capacity of Pseudomonas putida mt-2 is submitted to adaptation to abiotic stresses: evidence from expression profiling of xyl genes (pages 591–602)

      Francisco Velázquez, Víctor De Lorenzo and Marc Valls

      Article first published online: 31 OCT 2005 | DOI: 10.1111/j.1462-2920.2005.00936.x

    3. Improved serial analysis of V1 ribosomal sequence tags (SARST-V1) provides a rapid, comprehensive, sequence-based characterization of bacterial diversity and community composition (pages 603–611)

      Zhongtang Yu, Marie Yu and Mark Morrison

      Article first published online: 31 OCT 2005 | DOI: 10.1111/j.1462-2920.2005.00933.x

    4. Analysis of the first genome fragment from the marine sponge-associated, novel candidate phylum Poribacteria by environmental genomics (pages 612–624)

      Lars Fieseler, Achim Quaiser, Christa Schleper and Ute Hentschel

      Article first published online: 2 NOV 2005 | DOI: 10.1111/j.1462-2920.2005.00937.x

    5. Replicability of dominant bacterial populations after long-term surfactant-enrichment in lab-scale activated sludge (pages 625–638)

      Mariana Lozada, Eva L. M. Figuerola, Raúl F. Itria and Leonardo Erijman

      Article first published online: 2 NOV 2005 | DOI: 10.1111/j.1462-2920.2005.00939.x

    6. A two-partner secretion system is involved in seed and root colonization and iron uptake by Pseudomonas putida KT2440 (pages 639–647)

      María Antonia Molina, Juan-Luis Ramos and Manuel Espinosa-Urgel

      Article first published online: 2 NOV 2005 | DOI: 10.1111/j.1462-2920.2005.00940.x

    7. Membrane lipids of mesophilic anaerobic bacteria thriving in peats have typical archaeal traits (pages 648–657)

      Johan W. H. Weijers, Stefan Schouten, Ellen C. Hopmans, Jan A. J. Geenevasen, Olivier R. P. David, Joanna M. Coleman, Rich D. Pancost and Jaap S. Sinninghe Damsté

      Article first published online: 2 NOV 2005 | DOI: 10.1111/j.1462-2920.2005.00941.x

    8. Quantitative reverse transcription polymerase chain reaction analysis of Vibrio cholerae cells entering the viable but non-culturable state and starvation in response to cold shock (pages 658–666)

      Narjol González-Escalona, Axel Fey, Manfred G. Höfle, Romilio T. Espejo and Carlos A. Guzmán

      Article first published online: 2 NOV 2005 | DOI: 10.1111/j.1462-2920.2005.00943.x

    9. Vancomycin- and erythromycin-resistant enterococci in a pig farm and its environment (pages 667–674)

      Albert Manero, Xavier Vilanova, Marta Cerdà-Cuéllar and Anicet R. Blanch

      Article first published online: 18 NOV 2005 | DOI: 10.1111/j.1462-2920.2005.00945.x

    10. Vibrio parahaemolyticus in shellfish and clinical samples during two large epidemics of diarrhoea in southern Chile (pages 675–683)

      Loreto Fuenzalida, Cristina Hernández, Jessica Toro, M. Luisa Rioseco, Jaime Romero and Romilio T. Espejo

      Article first published online: 18 NOV 2005 | DOI: 10.1111/j.1462-2920.2005.00946.x

    11. Changes in the community structure and activity of betaproteobacterial ammonia-oxidizing sediment bacteria along a freshwater–marine gradient (pages 684–696)

      Thomas E. Freitag, Lisa Chang and James I. Prosser

      Article first published online: 28 NOV 2005 | DOI: 10.1111/j.1462-2920.2005.00947.x

    12. A new green fluorescent protein-based bacterial biosensor for analysing phenanthrene fluxes (pages 697–708)

      Robin Tecon, Mona Wells and Jan Roelof Van Der Meer

      Article first published online: 28 NOV 2005 | DOI: 10.1111/j.1462-2920.2005.00948.x

    13. Deep biosphere-related bacteria within the subsurface of tidal flat sediments (pages 709–719)

      Reinhard Wilms, Beate Köpke, Henrik Sass, Tae Soo Chang, Heribert Cypionka and Bert Engelen

      Article first published online: 8 DEC 2005 | DOI: 10.1111/j.1462-2920.2005.00949.x

    14. Denaturing gradient electrophoresis (DGE) and single-strand conformation polymorphism (SSCP) molecular fingerprintings revisited by simulation and used as a tool to measure microbial diversity (pages 720–731)

      Patrice Loisel, Jérôme Harmand, Olivier Zemb, Eric Latrille, Claude Lobry, Jean-Philippe Delgenès and Jean-Jacques Godon

      Article first published online: 8 DEC 2005 | DOI: 10.1111/j.1462-2920.2005.00950.x

    15. Quantifying the roles of immigration and chance in shaping prokaryote community structure (pages 732–740)

      William T. Sloan, Mary Lunn, Stephen Woodcock, Ian M. Head, Sean Nee and Thomas P. Curtis

      Article first published online: 8 DEC 2005 | DOI: 10.1111/j.1462-2920.2005.00956.x

  3. Brief reports

    1. Top of page
    2. Genomics update
    3. Research articles
    4. Brief reports
    5. Correspondence
    6. Web alert
    1. Improved template representation in cpn60 polymerase chain reaction (PCR) product libraries generated from complex templates by application of a specific mixture of PCR primers (pages 741–746)

      Janet E. Hill, Jennifer R. Town and Sean M. Hemmingsen

      Article first published online: 18 NOV 2005 | DOI: 10.1111/j.1462-2920.2005.00944.x

    2. In situ probing of Xylella fastidiosa in honeydew of a xylem sap-feeding insect using 16S rRNA-targeted fluorescent oligonucleotides (pages 747–754)

      Jorge L. M. Rodrigues, Maria E. Silva-Stenico, Adriane N. De Souza, João R. S. Lopes and Siu M. Tsai

      Article first published online: 28 NOV 2005 | DOI: 10.1111/j.1462-2920.2005.00958.x

  4. Correspondence

    1. Top of page
    2. Genomics update
    3. Research articles
    4. Brief reports
    5. Correspondence
    6. Web alert
    1. ‘Everything is everywhere, but, the environment selects’; what did Baas Becking and Beijerinck really say? (pages 755–758)

      Rutger De Wit and Thierry Bouvier

      Article first published online: 8 MAR 2006 | DOI: 10.1111/j.1462-2920.2006.01017.x

  5. Web alert

    1. Top of page
    2. Genomics update
    3. Research articles
    4. Brief reports
    5. Correspondence
    6. Web alert
    1. Nitrogen heterocycles and bacteria : An annotated selection of World Wide Web sites relevant to the topics in Environmental Microbiology (pages 759–760)

      Lawrence P. Wackett

      Article first published online: 8 MAR 2006 | DOI: 10.1111/j.1462-2920.2006.01022.x

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