Environmental Microbiology

© Society for Applied Microbiology and Blackwell Publishing Ltd

Cover image for Vol. 10 Issue 10

October 2008

Volume 10, Issue 10

Pages 2471–2901

  1. Genomics update

    1. Top of page
    2. Genomics update
    3. Research articles
    4. Brief reports
    5. Web alert
    6. Corrigendum
    1. You have full text access to this OnlineOpen article
      The quest for biofuels fuels genome sequencing (pages 2471–2475)

      Michael Y. Galperin

      Article first published online: 10 SEP 2008 | DOI: 10.1111/j.1462-2920.2008.01754.x

  2. Research articles

    1. Top of page
    2. Genomics update
    3. Research articles
    4. Brief reports
    5. Web alert
    6. Corrigendum
    1. Iron availability affects mcyD expression and microcystin-LR synthesis in Microcystis aeruginosa PCC7806 (pages 2476–2483)

      Emma Sevilla, Beatriz Martin-Luna, Laura Vela, M. Teresa Bes, Maria F. Fillat and M. Luisa Peleato

      Article first published online: 18 JUL 2008 | DOI: 10.1111/j.1462-2920.2008.01663.x

    2. Assigning Escherichia coli strains to phylogenetic groups: multi-locus sequence typing versus the PCR triplex method (pages 2484–2496)

      David M. Gordon, Olivier Clermont, Heather Tolley and Erick Denamur

      Article first published online: 2 JUN 2008 | DOI: 10.1111/j.1462-2920.2008.01669.x

    3. Host-specificity of environmentally transmitted Mycoplasma-like isopod symbionts (pages 2497–2504)

      Sebastian Fraune and Martin Zimmer

      Article first published online: 4 JUN 2008 | DOI: 10.1111/j.1462-2920.2008.01672.x

    4. Power output and columbic efficiencies from biofilms of Geobacter sulfurreducens comparable to mixed community microbial fuel cells (pages 2505–2514)

      K. P. Nevin, H. Richter, S. F. Covalla, J. P. Johnson, T. L. Woodard, A. L. Orloff, H. Jia, M. Zhang and D. R. Lovley

      Article first published online: 28 JUN 2008 | DOI: 10.1111/j.1462-2920.2008.01675.x

    5. Development and evaluation of a quantitative real-time PCR assay for the detection of saltwater Bacteriovorax (pages 2515–2526)

      Guili Zheng, Cynthia Wang, Henry N. Williams and Silvia A. Pineiro

      Article first published online: 9 JUL 2008 | DOI: 10.1111/j.1462-2920.2008.01676.x

    6. Fingerprinting the genetic diversity of the biotin carboxylase gene (accC) in aquatic ecosystems as a potential marker for studies of carbon dioxide assimilation in the dark (pages 2527–2536)

      Jean-Christophe Auguet, Carles M. Borrego, Lluís Bañeras and Emilio O. Casamayor

      Article first published online: 28 JUN 2008 | DOI: 10.1111/j.1462-2920.2008.01677.x

    7. High beta diversity of bacteria in the shallow terrestrial subsurface (pages 2537–2549)

      Jianjun Wang, Yucheng Wu, Hongchen Jiang, Chunhai Li, Hailiang Dong, Qinglong Wu, Janne Soininen and Ji Shen

      Article first published online: 4 JUN 2008 | DOI: 10.1111/j.1462-2920.2008.01678.x

    8. The complete genome sequence of Moorella thermoacetica (f. Clostridium thermoaceticum) (pages 2550–2573)

      Elizabeth Pierce, Gary Xie, Ravi D. Barabote, Elizabeth Saunders, Cliff S. Han, John C. Detter, Paul Richardson, Thomas S. Brettin, Amaresh Das, Lars G. Ljungdahl and Stephen W. Ragsdale

      Article first published online: 9 JUL 2008 | DOI: 10.1111/j.1462-2920.2008.01679.x

    9. A large gene cluster encoding peptide synthetases and polyketide synthases is involved in production of siderophores and oxidative stress response in the cyanobacterium Anabaena sp. strain PCC 7120 (pages 2574–2585)

      Robert Jeanjean, Emmanuel Talla, Amel Latifi, Michel Havaux, Annick Janicki and Cheng-Cai Zhang

      Article first published online: 28 JUN 2008 | DOI: 10.1111/j.1462-2920.2008.01680.x

    10. Inverse nickel-responsive regulation of two urease enzymes in the gastric pathogen Helicobacter mustelae (pages 2586–2597)

      Jeroen Stoof, Simone Breijer, Raymond G. J. Pot, Daan van der Neut, Ernst J. Kuipers, Johannes G. Kusters and Arnoud H. M. van Vliet

      Article first published online: 28 JUN 2008 | DOI: 10.1111/j.1462-2920.2008.01681.x

    11. You have full text access to this OnlineOpen article
      Quantitative microbial faecal source tracking with sampling guided by hydrological catchment dynamics (pages 2598–2608)

      G. H. Reischer, J. M. Haider, R. Sommer, H. Stadler, K. M. Keiblinger, R. Hornek, W. Zerobin, R. L. Mach and A. H. Farnleitner

      Article first published online: 28 JUN 2008 | DOI: 10.1111/j.1462-2920.2008.01682.x

    12. Revealing the uncultivated majority: combining DNA stable-isotope probing, multiple displacement amplification and metagenomic analyses of uncultivated Methylocystis in acidic peatlands (pages 2609–2622)

      Yin Chen, Marc G. Dumont, Josh D. Neufeld, Levente Bodrossy, Nancy Stralis-Pavese, Niall P. McNamara, Nick Ostle, Maria J. I. Briones and J. Colin Murrell

      Article first published online: 10 JUL 2008 | DOI: 10.1111/j.1462-2920.2008.01683.x

    13. Epibiotic bacteria associated with the recently discovered Yeti crab, Kiwa hirsuta (pages 2623–2634)

      Shana K. Goffredi, William J. Jones, Hermann Erhlich, Armin Springer and Robert C. Vrijenhoek

      Article first published online: 28 JUN 2008 | DOI: 10.1111/j.1462-2920.2008.01684.x

    14. Diversification of unicellular eukaryotes: cryptomonad colonizations of marine and fresh waters inferred from revised 18S rRNA phylogeny (pages 2635–2644)

      Kamran Shalchian-Tabrizi, Jon Bråte, Ramiro Logares, Dag Klaveness, Cédric Berney and Kjetill S. Jakobsen

      Article first published online: 16 JUL 2008 | DOI: 10.1111/j.1462-2920.2008.01685.x

    15. Identity and abundance of active sulfate-reducing bacteria in deep tidal flat sediments determined by directed cultivation and CARD-FISH analysis (pages 2645–2658)

      Antje Gittel, Marc Mußmann, Henrik Sass, Heribert Cypionka and Martin Könneke

      Article first published online: 8 JUL 2008 | DOI: 10.1111/j.1462-2920.2008.01686.x

    16. How natural infection by Nosema ceranae causes honeybee colony collapse (pages 2659–2669)

      Mariano Higes, Raquel Martín-Hernández, Cristina Botías, Encarna Garrido Bailón, Amelia V. González-Porto, Laura Barrios, M. Jesús del Nozal, José L. Bernal, Juan J. Jiménez, Pilar García Palencia and Aránzazu Meana

      Article first published online: 18 JUL 2008 | DOI: 10.1111/j.1462-2920.2008.01687.x

    17. Enrichment of a dioxin-dehalogenating Dehalococcoides species in two-liquid phase cultures (pages 2670–2683)

      Michael Bunge, Anke Wagner, Marco Fischer, Jan R. Andreesen and Ute Lechner

      Article first published online: 8 JUL 2008 | DOI: 10.1111/j.1462-2920.2008.01688.x

    18. Enriching plant microbiota for a metagenomic library construction (pages 2684–2691)

      Hao-Xin Wang, Zhao-Liang Geng, Ying Zeng and Yue-Mao Shen

      Article first published online: 9 JUL 2008 | DOI: 10.1111/j.1462-2920.2008.01689.x

    19. Environmental distribution and population biology of Candidatus Accumulibacter, a primary agent of biological phosphorus removal (pages 2692–2703)

      S. Brook Peterson, Falk Warnecke, Julita Madejska, Katherine D. McMahon and Philip Hugenholtz

      Article first published online: 17 JUL 2008 | DOI: 10.1111/j.1462-2920.2008.01690.x

    20. Comparative analysis of genome fragments of Acidobacteria from deep Mediterranean plankton (pages 2704–2717)

      Achim Quaiser, Purificación López-García, Yvan Zivanovic, Matthew R. Henn, Francisco Rodriguez-Valera and David Moreira

      Article first published online: 8 JUL 2008 | DOI: 10.1111/j.1462-2920.2008.01691.x

    21. Increased susceptibility of white spot syndrome virus-infected Litopenaeus vannamei to Vibrio campbellii (pages 2718–2727)

      L. H. Phuoc, M. Corteel, H. J. Nauwynck, M. B. Pensaert, V. Alday-Sanz, W. Van den Broeck, P. Sorgeloos and P. Bossier

      Article first published online: 8 JUL 2008 | DOI: 10.1111/j.1462-2920.2008.01692.x

    22. Biodiversity of amoebae and amoebae-resisting bacteria in a drinking water treatment plant (pages 2728–2745)

      Vincent Thomas, Jean-François Loret, Michel Jousset and Gilbert Greub

      Article first published online: 14 JUL 2008 | DOI: 10.1111/j.1462-2920.2008.01693.x

    23. Differential pathogenicity and genetic diversity among Pectobacterium carotovorum ssp. carotovorum isolates from monocot and dicot hosts support early genomic divergence within this taxon (pages 2746–2759)

      Moran Yishay, Saul Burdman, Angel Valverde, Tal Luzzatto, Ron Ophir and Iris Yedidia

      Article first published online: 3 AUG 2008 | DOI: 10.1111/j.1462-2920.2008.01694.x

    24. Colonization of overlaying water by bacteria from dry river sediments (pages 2760–2772)

      Stefano Fazi, Stefano Amalfitano, Claudia Piccini, Annamaria Zoppini, Alberto Puddu and Jakob Pernthaler

      Article first published online: 16 JUL 2008 | DOI: 10.1111/j.1462-2920.2008.01695.x

    25. Burkholderia cenocepacia strains isolated from cystic fibrosis patients are apparently more invasive and more virulent than rhizosphere strains (pages 2773–2784)

      Luisa Pirone, Alessandra Bragonzi, Alessio Farcomeni, Moira Paroni, Cristina Auriche, Massimo Conese, Luigi Chiarini, Claudia Dalmastri, Annamaria Bevivino and Fiorentina Ascenzioni

      Article first published online: 16 JUL 2008 | DOI: 10.1111/j.1462-2920.2008.01697.x

    26. The Mth60 fimbriae of Methanothermobacter thermoautotrophicus are functional adhesins (pages 2785–2795)

      Christine Thoma, Monika Frank, Reinhard Rachel, Silvia Schmid, Daniela Näther, Gerhard Wanner and Reinhard Wirth

      Article first published online: 16 JUL 2008 | DOI: 10.1111/j.1462-2920.2008.01698.x

    27. The identification of response regulator-specific binding sites reveals new roles of two-component systems in Bacillus cereus and closely related low-GC Gram-positives (pages 2796–2809)

      Mark de Been, Marieke J. Bart, Tjakko Abee, Roland J. Siezen and Christof Francke

      Article first published online: 25 JUL 2008 | DOI: 10.1111/j.1462-2920.2008.01700.x

    28. You have full text access to this OnlineOpen article
      Portal protein diversity and phage ecology (pages 2810–2823)

      Matthew B. Sullivan, Maureen L. Coleman, Vanessa Quinlivan, Jessica E. Rosenkrantz, Alicia S. DeFrancesco, G. Tan, Ross Fu, Jessica A. Lee, John B. Waterbury, Joseph P. Bielawski and Sallie W. Chisholm

      Article first published online: 31 JUL 2008 | DOI: 10.1111/j.1462-2920.2008.01702.x

      Corrected by:

      Portal protein diversity and phage ecology

      Vol. 13, Issue 10, 2832, Article first published online: 10 OCT 2011

    29. The microbial community of Vetiver root and its involvement into essential oil biogenesis (pages 2824–2841)

      Luigi Del Giudice, Domenica Rita Massardo, Paola Pontieri, Cinzia M. Bertea, Domenico Mombello, Elisabetta Carata, Salvatore Maurizio Tredici, Adelfia Talà, Marco Mucciarelli, Veneta Ivanova Groudeva, Mario De Stefano, Giovanni Vigliotta, Massimo E. Maffei and Pietro Alifano

      Article first published online: 25 JUL 2008 | DOI: 10.1111/j.1462-2920.2008.01703.x

    30. Identification and analysis of four candidate symbiosis genes from ‘Chlorochromatium aggregatum’, a highly developed bacterial symbiosis (pages 2842–2856)

      Kajetan Vogl, Roland Wenter, Martina Dreßen, Martina Schlickenrieder, Matthias Plöscher, Lutz Eichacker and Jörg Overmann

      Article first published online: 14 AUG 2008 | DOI: 10.1111/j.1462-2920.2008.01709.x

    31. Structural and functional patterns of bacterial communities in response to protist predation along an experimental productivity gradient (pages 2857–2871)

      Gianluca Corno and Klaus Jürgens

      Article first published online: 5 AUG 2008 | DOI: 10.1111/j.1462-2920.2008.01713.x

    32. Systematic evaluation of single mismatch stability predictors for fluorescence in situ hybridization (pages 2872–2885)

      L. Safak Yilmaz, Lindsey I. Bergsven and Daniel R. Noguera

      Article first published online: 14 AUG 2008 | DOI: 10.1111/j.1462-2920.2008.01719.x

  3. Brief reports

    1. Top of page
    2. Genomics update
    3. Research articles
    4. Brief reports
    5. Web alert
    6. Corrigendum
    1. ColRS two-component system prevents lysis of subpopulation of glucose-grown Pseudomonas putida (pages 2886–2893)

      Marta Putrinš, Heili Ilves, Maia Kivisaar and Rita Hõrak

      Article first published online: 24 JUL 2008 | DOI: 10.1111/j.1462-2920.2008.01705.x

    2. You have full text access to this OnlineOpen article
      probeCheck – a central resource for evaluating oligonucleotide probe coverage and specificity (pages 2894–2898)

      Alexander Loy, Roland Arnold, Patrick Tischler, Thomas Rattei, Michael Wagner and Matthias Horn

      Article first published online: 21 JUL 2008 | DOI: 10.1111/j.1462-2920.2008.01706.x

  4. Web alert

    1. Top of page
    2. Genomics update
    3. Research articles
    4. Brief reports
    5. Web alert
    6. Corrigendum
    1. Quorum sensing : An annotated selection of World Wide Web sites relevant to the topics in Environmental Microbiology (pages 2899–2900)

      Lawrence P. Wackett

      Article first published online: 10 SEP 2008 | DOI: 10.1111/j.1462-2920.2008.01755.x

  5. Corrigendum

    1. Top of page
    2. Genomics update
    3. Research articles
    4. Brief reports
    5. Web alert
    6. Corrigendum
    1. You have free access to this content
      Fluorescence in situ hybridization analysis of hindgut bacteria associated with the development of equine laminitis (page 2901)

      Gabriel J. Milinovich, Darren J. Trott, Paul C. Burrell, Emma L. Croser, Rafat A. M. Al Jassim, John M. Morton, Andrew W. van Eps and Christopher C. Pollitt

      Article first published online: 10 SEP 2008 | DOI: 10.1111/j.1462-2920.2008.01739.x

      This article corrects:

      Fluorescence in situ hybridization analysis of hindgut bacteria associated with the development of equine laminitis

      Vol. 9, Issue 8, 2090–2100, Article first published online: 28 MAY 2007

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