Environmental Microbiology

Cover image for Vol. 10 Issue 11

November 2008

Volume 10, Issue 11

Pages 2903–3185

  1. Editorial

    1. Top of page
    2. Editorial
    3. Nitrogen fixation
    4. Ammonium-oxidation by bacteria and crenarchaea
    5. Regulation of metabolism in nitrifying bacteria
    6. Diversity of denitrifying bacteria and enzymes
    7. Functional diversity of fresh water and marine anammox bacteria
    8. Physiology of nitrite-dependent anaerobic methane oxidation
    9. Degradation of recalcitrant organic nitrogen compounds
    10. Web alert
    1. The microbial nitrogen cycle (pages 2903–2909)

      Mike S. M. Jetten

      Version of Record online: 30 SEP 2008 | DOI: 10.1111/j.1462-2920.2008.01786.x

  2. Nitrogen fixation

    1. Top of page
    2. Editorial
    3. Nitrogen fixation
    4. Ammonium-oxidation by bacteria and crenarchaea
    5. Regulation of metabolism in nitrifying bacteria
    6. Diversity of denitrifying bacteria and enzymes
    7. Functional diversity of fresh water and marine anammox bacteria
    8. Physiology of nitrite-dependent anaerobic methane oxidation
    9. Degradation of recalcitrant organic nitrogen compounds
    10. Web alert
    1. Diversity and expression of nitrogen fixation genes in bacterial symbionts of marine sponges (pages 2910–2921)

      Naglaa M. Mohamed, Albert S. Colman, Yossi Tal and Russell T. Hill

      Version of Record online: 28 AUG 2008 | DOI: 10.1111/j.1462-2920.2008.01704.x

    2. Influence of different Sinorhizobium meliloti inocula on abundance of genes involved in nitrogen transformations in the rhizosphere of alfalfa (Medicago sativa L.) (pages 2922–2930)

      Katarina Huić Babić, Kristina Schauss, Brigitte Hai, Sanja Sikora, Sulejman Redžepović, Viviane Radl and Michael Schloter

      Version of Record online: 30 SEP 2008 | DOI: 10.1111/j.1462-2920.2008.01762.x

  3. Ammonium-oxidation by bacteria and crenarchaea

    1. Top of page
    2. Editorial
    3. Nitrogen fixation
    4. Ammonium-oxidation by bacteria and crenarchaea
    5. Regulation of metabolism in nitrifying bacteria
    6. Diversity of denitrifying bacteria and enzymes
    7. Functional diversity of fresh water and marine anammox bacteria
    8. Physiology of nitrite-dependent anaerobic methane oxidation
    9. Degradation of recalcitrant organic nitrogen compounds
    10. Web alert
    1. You have free access to this content
    2. Community composition of ammonia-oxidizing bacteria and archaea in soils under stands of red alder and Douglas fir in Oregon (pages 2956–2965)

      Stephanie A. Boyle-Yarwood, Peter J. Bottomley and David D. Myrold

      Version of Record online: 3 APR 2008 | DOI: 10.1111/j.1462-2920.2008.01600.x

    3. The influence of soil pH on the diversity, abundance and transcriptional activity of ammonia oxidizing archaea and bacteria (pages 2966–2978)

      Graeme W. Nicol, Sven Leininger, Christa Schleper and James I. Prosser

      Version of Record online: 14 AUG 2008 | DOI: 10.1111/j.1462-2920.2008.01701.x

    4. Global distribution and diversity of coral-associated Archaea and their possible role in the coral holobiont nitrogen cycle (pages 2979–2990)

      Nachshon Siboni, Eitan Ben-Dov, Alex Sivan and Ariel Kushmaro

      Version of Record online: 14 AUG 2008 | DOI: 10.1111/j.1462-2920.2008.01718.x

    5. Ammonia-oxidizing Crenarchaeota and nitrification inside the tissue of a colonial ascidian (pages 2991–3001)

      Manuel Martínez-García, Peter Stief, Marta Díaz-Valdés, Gerhard Wanner, Alfonso Ramos-Esplá, Nicole Dubilier and Josefa Antón

      Version of Record online: 12 SEP 2008 | DOI: 10.1111/j.1462-2920.2008.01761.x

    6. Niche separation of ammonia-oxidizing bacteria across a tidal freshwater marsh (pages 3017–3025)

      Hendrikus J. Laanbroek and Arjen G. C. L. Speksnijder

      Version of Record online: 9 MAY 2008 | DOI: 10.1111/j.1462-2920.2008.01655.x

  4. Regulation of metabolism in nitrifying bacteria

    1. Top of page
    2. Editorial
    3. Nitrogen fixation
    4. Ammonium-oxidation by bacteria and crenarchaea
    5. Regulation of metabolism in nitrifying bacteria
    6. Diversity of denitrifying bacteria and enzymes
    7. Functional diversity of fresh water and marine anammox bacteria
    8. Physiology of nitrite-dependent anaerobic methane oxidation
    9. Degradation of recalcitrant organic nitrogen compounds
    10. Web alert
    1. Environmental genomics reveals a functional chlorite dismutase in the nitrite-oxidizing bacterium ‘Candidatus Nitrospira defluvii’ (pages 3043–3056)

      Frank Maixner, Michael Wagner, Sebastian Lücker, Eric Pelletier, Stephan Schmitz-Esser, Karin Hace, Eva Spieck, Robert Konrat, Denis Le Paslier and Holger Daims

      Version of Record online: 5 MAY 2008 | DOI: 10.1111/j.1462-2920.2008.01646.x

  5. Diversity of denitrifying bacteria and enzymes

    1. Top of page
    2. Editorial
    3. Nitrogen fixation
    4. Ammonium-oxidation by bacteria and crenarchaea
    5. Regulation of metabolism in nitrifying bacteria
    6. Diversity of denitrifying bacteria and enzymes
    7. Functional diversity of fresh water and marine anammox bacteria
    8. Physiology of nitrite-dependent anaerobic methane oxidation
    9. Degradation of recalcitrant organic nitrogen compounds
    10. Web alert
    1. Sediment denitrifier community composition and nirS gene expression investigated with functional gene microarrays (pages 3057–3069)

      Silvia E. Bulow, Christopher A. Francis, George A. Jackson and Bess B. Ward

      Version of Record online: 30 SEP 2008 | DOI: 10.1111/j.1462-2920.2008.01765.x

    2. Disentangling the rhizosphere effect on nitrate reducers and denitrifiers: insight into the role of root exudates (pages 3082–3092)

      S. Henry, S. Texier, S. Hallet, D. Bru, C. Dambreville, D. Chèneby, F. Bizouard, J. C. Germon and L. Philippot

      Version of Record online: 3 APR 2008 | DOI: 10.1111/j.1462-2920.2008.01599.x

    3. The effects of chronic nitrogen fertilization on alpine tundra soil microbial communities: implications for carbon and nitrogen cycling (pages 3093–3105)

      Diana R. Nemergut, Alan R. Townsend, Sarah R. Sattin, Kristen R. Freeman, Noah Fierer, Jason C. Neff, William D. Bowman, Christopher W. Schadt, Michael N. Weintraub and Steven K. Schmidt

      Version of Record online: 1 SEP 2008 | DOI: 10.1111/j.1462-2920.2008.01735.x

  6. Functional diversity of fresh water and marine anammox bacteria

    1. Top of page
    2. Editorial
    3. Nitrogen fixation
    4. Ammonium-oxidation by bacteria and crenarchaea
    5. Regulation of metabolism in nitrifying bacteria
    6. Diversity of denitrifying bacteria and enzymes
    7. Functional diversity of fresh water and marine anammox bacteria
    8. Physiology of nitrite-dependent anaerobic methane oxidation
    9. Degradation of recalcitrant organic nitrogen compounds
    10. Web alert
    1. A microdiversity study of anammox bacteria reveals a novel Candidatus Scalindua phylotype in marine oxygen minimum zones (pages 3106–3119)

      Dagmar Woebken, Phyllis Lam, Marcel M. M. Kuypers, S. Wajih A. Naqvi, Boran Kartal, Marc Strous, Mike S. M. Jetten, Bernhard M. Fuchs and Rudolf Amann

      Version of Record online: 28 MAY 2008 | DOI: 10.1111/j.1462-2920.2008.01640.x

      Corrected by:

      Corrigendum

      Vol. 12, Issue 8, 2384, Version of Record online: 4 AUG 2010

    2. Enrichment and characterization of marine anammox bacteria associated with global nitrogen gas production (pages 3120–3129)

      Jack Van De Vossenberg, Jayne E. Rattray, Wim Geerts, Boran Kartal, Laura Van Niftrik, Elly G. Van Donselaar, Jaap S. Sinninghe Damsté, Marc Strous and Mike S. M. Jetten

      Version of Record online: 6 MAY 2008 | DOI: 10.1111/j.1462-2920.2008.01643.x

    3. Diversity of ammonium-oxidizing bacteria in a granular sludge anaerobic ammonium-oxidizing (anammox) reactor (pages 3130–3139)

      Zhe-Xue Quan, Sung-Keun Rhee, Jian-E Zuo, Yang Yang, Jin-Woo Bae, Ja Ryeong Park, Sung-Taik Lee and Yong-Ha Park

      Version of Record online: 9 MAY 2008 | DOI: 10.1111/j.1462-2920.2008.01642.x

    4. Environmental detection of octahaem cytochrome c hydroxylamine/hydrazine oxidoreductase genes of aerobic and anaerobic ammonium-oxidizing bacteria (pages 3140–3149)

      Markus C. Schmid, Alan B. Hooper, Martin G. Klotz, Dagmar Woebken, Phyllis Lam, Marcel M. M. Kuypers, Andreas Pommerening-Roeser, Huub J. M. Op Den Camp and Mike S. M. Jetten

      Version of Record online: 30 SEP 2008 | DOI: 10.1111/j.1462-2920.2008.01732.x

    5. Evolution of an octahaem cytochrome c protein family that is key to aerobic and anaerobic ammonia oxidation by bacteria (pages 3150–3163)

      Martin G. Klotz, Markus C. Schmid, Marc Strous, Huub J. M. Op Den Camp, Mike S. M. Jetten and Alan B. Hooper

      Version of Record online: 28 AUG 2008 | DOI: 10.1111/j.1462-2920.2008.01733.x

  7. Physiology of nitrite-dependent anaerobic methane oxidation

    1. Top of page
    2. Editorial
    3. Nitrogen fixation
    4. Ammonium-oxidation by bacteria and crenarchaea
    5. Regulation of metabolism in nitrifying bacteria
    6. Diversity of denitrifying bacteria and enzymes
    7. Functional diversity of fresh water and marine anammox bacteria
    8. Physiology of nitrite-dependent anaerobic methane oxidation
    9. Degradation of recalcitrant organic nitrogen compounds
    10. Web alert
    1. Denitrifying bacteria anaerobically oxidize methane in the absence of Archaea (pages 3164–3173)

      Katharina F. Ettwig, Seigo Shima, Katinka T. Van De Pas-Schoonen, Jörg Kahnt, Marnix H. Medema, Huub J. M. Op Den Camp, Mike S. M. Jetten and Marc Strous

      Version of Record online: 21 AUG 2008 | DOI: 10.1111/j.1462-2920.2008.01724.x

  8. Degradation of recalcitrant organic nitrogen compounds

    1. Top of page
    2. Editorial
    3. Nitrogen fixation
    4. Ammonium-oxidation by bacteria and crenarchaea
    5. Regulation of metabolism in nitrifying bacteria
    6. Diversity of denitrifying bacteria and enzymes
    7. Functional diversity of fresh water and marine anammox bacteria
    8. Physiology of nitrite-dependent anaerobic methane oxidation
    9. Degradation of recalcitrant organic nitrogen compounds
    10. Web alert
    1. The NprA nitroreductase required for 2,4-dinitrophenol reduction in Rhodobacter capsulatus is a dihydropteridine reductase (pages 3174–3183)

      Eva Pérez-Reinado, María Dolores Roldán, Francisco Castillo and Conrado Moreno-Vivián

      Version of Record online: 18 MAR 2008 | DOI: 10.1111/j.1462-2920.2008.01585.x

  9. Web alert

    1. Top of page
    2. Editorial
    3. Nitrogen fixation
    4. Ammonium-oxidation by bacteria and crenarchaea
    5. Regulation of metabolism in nitrifying bacteria
    6. Diversity of denitrifying bacteria and enzymes
    7. Functional diversity of fresh water and marine anammox bacteria
    8. Physiology of nitrite-dependent anaerobic methane oxidation
    9. Degradation of recalcitrant organic nitrogen compounds
    10. Web alert

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