Environmental Microbiology

© Society for Applied Microbiology and John Wiley & Sons Ltd

Cover image for Vol. 14 Issue 2

Special Issue: Taxonomy and Biodiversity

February 2012

Volume 14, Issue 2

Pages 285–558

  1. Correspondence

    1. Top of page
    2. Correspondence
    3. Minireviews
    4. Research articles
    1. Massively parallel rRNA gene sequencing exacerbates the potential for biased community diversity comparisons due to variable library sizes (pages 285–290)

      Thomas M. Gihring, Stefan J. Green and Christopher W. Schadt

      Article first published online: 19 SEP 2011 | DOI: 10.1111/j.1462-2920.2011.02550.x

  2. Minireviews

    1. Top of page
    2. Correspondence
    3. Minireviews
    4. Research articles
    1. You have free access to this content
      Prokaryotic taxonomy in the sequencing era – the polyphasic approach revisited (pages 291–317)

      Peter Kämpfer and Stefanie P. Glaeser

      Article first published online: 31 OCT 2011 | DOI: 10.1111/j.1462-2920.2011.02615.x

    2. You have free access to this content
      Towards a taxonomy of Bacteria and Archaea based on interactive and cumulative data repositories (pages 318–334)

      Ramon Rosselló-Móra

      Article first published online: 29 SEP 2011 | DOI: 10.1111/j.1462-2920.2011.02599.x

    3. You have free access to this content
      Marine sponges and their microbial symbionts: love and other relationships (pages 335–346)

      Nicole S. Webster and Michael W. Taylor

      Article first published online: 28 MAR 2011 | DOI: 10.1111/j.1462-2920.2011.02460.x

    4. You have free access to this content
      Bacterial species may exist, metagenomics reveal (pages 347–355)

      Alejandro Caro-Quintero and Konstantinos T. Konstantinidis

      Article first published online: 12 DEC 2011 | DOI: 10.1111/j.1462-2920.2011.02668.x

    5. You have free access to this content
      Detecting unknown sequences with DNA microarrays: explorative probe design strategies (pages 356–371)

      Eric Dugat-Bony, Eric Peyretaillade, Nicolas Parisot, Corinne Biderre-Petit, Faouzi Jaziri, David Hill, Sébastien Rimour and Pierre Peyret

      Article first published online: 5 SEP 2011 | DOI: 10.1111/j.1462-2920.2011.02559.x

  3. Research articles

    1. Top of page
    2. Correspondence
    3. Minireviews
    4. Research articles
    1. Multi-locus sequence analysis, taxonomic resolution and biogeography of marine Synechococcus (pages 372–386)

      Sophie Mazard, Martin Ostrowski, Frédéric Partensky and David J. Scanlan

      Article first published online: 8 JUN 2011 | DOI: 10.1111/j.1462-2920.2011.02514.x

    2. You have full text access to this OnlineOpen article
      Massive dominance of Epsilonproteobacteria in formation waters from a Canadian oil sands reservoir containing severely biodegraded oil (pages 387–404)

      Casey R. J. Hubert, Thomas B. P. Oldenburg, Milovan Fustic, Neil D. Gray, Stephen R. Larter, Kevin Penn, Arlene K. Rowan, Rekha Seshadri, Angela Sherry, Richard Swainsbury, Gerrit Voordouw, Johanna K. Voordouw and Ian M. Head

      Article first published online: 8 AUG 2011 | DOI: 10.1111/j.1462-2920.2011.02521.x

    3. A novel genus of multicellular magnetotactic prokaryotes from the Yellow Sea (pages 405–413)

      Ke Zhou, Wen-Yan Zhang, Kui Yu-Zhang, Hong-Miao Pan, Sheng-Da Zhang, Wei-Jia Zhang, Hai-Dong Yue, Ying Li, Tian Xiao and Long-Fei Wu

      Article first published online: 6 OCT 2011 | DOI: 10.1111/j.1462-2920.2011.02590.x

    4. Vertical stratification of subsurface microbial community composition across geological formations at the Hanford Site (pages 414–425)

      Xueju Lin, David Kennedy, Jim Fredrickson, Bruce Bjornstad and Allan Konopka

      Article first published online: 29 NOV 2011 | DOI: 10.1111/j.1462-2920.2011.02659.x

    5. Global network of specific virus–host interactions in hypersaline environments (pages 426–440)

      Nina S. Atanasova, Elina Roine, Aharon Oren, Dennis H. Bamford and Hanna M. Oksanen

      Article first published online: 17 OCT 2011 | DOI: 10.1111/j.1462-2920.2011.02603.x

    6. Metagenomic analysis of DNA viruses in a wastewater treatment plant in tropical climate (pages 441–452)

      Hideyuki Tamaki, Rui Zhang, Florent E. Angly, Shota Nakamura, Pei-Ying Hong, Teruo Yasunaga, Yoichi Kamagata and Wen-Tso Liu

      Article first published online: 31 OCT 2011 | DOI: 10.1111/j.1462-2920.2011.02630.x

    7. Analysis of two marine metagenomes reveals the diversity of plasmids in oceanic environments (pages 453–466)

      Yingfei Ma, Ian T. Paulsen and Brian Palenik

      Article first published online: 8 NOV 2011 | DOI: 10.1111/j.1462-2920.2011.02633.x

    8. Genetic structure of three fosmid-fragments encoding 16S rRNA genes of the Miscellaneous Crenarchaeotic Group (MCG): implications for physiology and evolution of marine sedimentary archaea (pages 467–479)

      Ping-Yi Li, Bin-Bin Xie, Xi-Ying Zhang, Qi-Long Qin, Hong-Yue Dang, Xu-Min Wang, Xiu-Lan Chen, Jun Yu and Yu-Zhong Zhang

      Article first published online: 28 NOV 2011 | DOI: 10.1111/j.1462-2920.2011.02637.x

    9. Microdiversity and evidence for high dispersal rates in the marine actinomycete ‘Salinispora pacifica’ (pages 480–493)

      Kelle C. Freel, Anna Edlund and Paul R. Jensen

      Article first published online: 28 NOV 2011 | DOI: 10.1111/j.1462-2920.2011.02641.x

    10. Human norovirus occurrence and diversity in the Llobregat river catchment, Spain (pages 494–502)

      Unai Pérez-Sautu, Daisuke Sano, Susana Guix, Georg Kasimir, Rosa M. Pintó and Albert Bosch

      Article first published online: 28 NOV 2011 | DOI: 10.1111/j.1462-2920.2011.02642.x

    11. TPV1, the first virus isolated from the hyperthermophilic genus Thermococcus (pages 503–516)

      Aurore Gorlas, Eugene V. Koonin, Nadège Bienvenu, Daniel Prieur and Claire Geslin

      Article first published online: 12 DEC 2011 | DOI: 10.1111/j.1462-2920.2011.02662.x

    12. Sponge-specific clusters revisited: a comprehensive phylogeny of sponge-associated microorganisms (pages 517–524)

      Rachel L. Simister, Peter Deines, Emmanuelle S. Botté, Nicole S. Webster and Michael W. Taylor

      Article first published online: 12 DEC 2011 | DOI: 10.1111/j.1462-2920.2011.02664.x

    13. You have full text access to this OnlineOpen article
      amoA-based consensus phylogeny of ammonia-oxidizing archaea and deep sequencing of amoA genes from soils of four different geographic regions (pages 525–539)

      Michael Pester, Thomas Rattei, Stefan Flechl, Alexander Gröngröft, Andreas Richter, Jörg Overmann, Barbara Reinhold-Hurek, Alexander Loy and Michael Wagner

      Article first published online: 5 DEC 2011 | DOI: 10.1111/j.1462-2920.2011.02666.x

    14. Genome sequences of siphoviruses infecting marine Synechococcus unveil a diverse cyanophage group and extensive phage–host genetic exchanges (pages 540–558)

      Sijun Huang, Kui Wang, Nianzhi Jiao and Feng Chen

      Article first published online: 22 DEC 2011 | DOI: 10.1111/j.1462-2920.2011.02667.x

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