Environmental Microbiology

Cover image for Vol. 16 Issue 1

Special Issue: Metabolism & Biodegradation

January 2014

Volume 16, Issue 1

Pages 1–334

  1. Genomics update

    1. Top of page
    2. Genomics update
    3. Opinion
    4. Minireviews
    5. Research articles
    6. Errata
    7. Web alert
    1. You have free access to this content
      Control of methionine metabolism by the SahR transcriptional regulator in Proteobacteria (pages 1–8)

      Pavel S. Novichkov, Xiaoqing Li, Jennifer V. Kuehl, Adam M. Deutschbauer, Adam P. Arkin, Morgan N. Price and Dmitry A. Rodionov

      Version of Record online: 9 OCT 2013 | DOI: 10.1111/1462-2920.12273

  2. Opinion

    1. Top of page
    2. Genomics update
    3. Opinion
    4. Minireviews
    5. Research articles
    6. Errata
    7. Web alert
    1. Pipelines for New Chemicals: a strategy to create new value chains and stimulate innovation-based economic revival in Southern European countries (pages 9–18)

      Kenneth Timmis, Victor de Lorenzo, Willy Verstraete, Jose Luis Garcia, Juan Luis Ramos, Helena Santos, Ioannis Economidis, Balbina Nogales, James Kenneth Timmis, César Fonseca, Carla Pruzzo, Amalia Karagouni, Nickolas Panopoulos and Bernard Dixon

      Version of Record online: 6 JAN 2014 | DOI: 10.1111/1462-2920.12337

  3. Minireviews

    1. Top of page
    2. Genomics update
    3. Opinion
    4. Minireviews
    5. Research articles
    6. Errata
    7. Web alert
    1. You have free access to this content
      The logic of metabolism and its fuzzy consequences (pages 19–28)

      Antoine Danchin and Agnieszka Sekowska

      Version of Record online: 6 OCT 2013 | DOI: 10.1111/1462-2920.12270

    2. You have free access to this content
      Functional diversity of Nocardia in metabolism (pages 29–48)

      Quan Luo, Sebastian Hiessl and Alexander Steinbüchel

      Version of Record online: 28 AUG 2013 | DOI: 10.1111/1462-2920.12221

    3. You have free access to this content
      Software platforms to facilitate reconstructing genome-scale metabolic networks (pages 49–59)

      Joshua J. Hamilton and Jennifer L. Reed

      Version of Record online: 18 NOV 2013 | DOI: 10.1111/1462-2920.12312

  4. Research articles

    1. Top of page
    2. Genomics update
    3. Opinion
    4. Minireviews
    5. Research articles
    6. Errata
    7. Web alert
    1. Novel hydrocarbon monooxygenase genes in the metatranscriptome of a natural deep-sea hydrocarbon plume (pages 60–71)

      Meng Li, Sunit Jain, Brett J. Baker, Chris Taylor and Gregory J. Dick

      Version of Record online: 4 JUL 2013 | DOI: 10.1111/1462-2920.12182

    2. Macroecology of methane-oxidizing bacteria: the β-diversity of pmoA genotypes in tropical and subtropical rice paddies (pages 72–83)

      Claudia Lüke, Peter Frenzel, Adrian Ho, Dian Fiantis, Peter Schad, Bellinda Schneider, Lorenz Schwark and Sri Rahayu Utami

      Version of Record online: 1 AUG 2013 | DOI: 10.1111/1462-2920.12190

    3. Paralogous metabolism: S-alkyl-cysteine degradation in Bacillus subtilis (pages 101–117)

      Che-Man Chan, Antoine Danchin, Philippe Marlière and Agnieszka Sekowska

      Version of Record online: 14 AUG 2013 | DOI: 10.1111/1462-2920.12210

    4. Foraging by a wood-decomposing fungus is ecologically adaptive (pages 118–129)

      P. R. Darrah and M. D. Fricker

      Version of Record online: 15 AUG 2013 | DOI: 10.1111/1462-2920.12216

    5. The importance of hydrogen and formate transfer for syntrophic fatty, aromatic and alicyclic metabolism (pages 177–188)

      Jessica R. Sieber, Huynh M. Le and Michael J. McInerney

      Version of Record online: 6 OCT 2013 | DOI: 10.1111/1462-2920.12269

    6. Metabolic versatility of toluene-degrading, iron-reducing bacteria in tidal flat sediment, characterized by stable isotope probing-based metagenomic analysis (pages 189–204)

      So-Jeong Kim, Soo-Je Park, In-Tae Cha, Deullae Min, Jin-Seog Kim, Won-Hyung Chung, Jong-Chan Chae, Che Ok Jeon and Sung-Keun Rhee

      Version of Record online: 10 OCT 2013 | DOI: 10.1111/1462-2920.12277

    7. Pathways and substrate-specific regulation of amino acid degradation in Phaeobacter inhibens DSM 17395 (archetype of the marine Roseobacter clade) (pages 218–238)

      Katharina Drüppel, Michael Hensler, Kathleen Trautwein, Sebastian Koßmehl, Lars Wöhlbrand, Kerstin Schmidt-Hohagen, Marcus Ulbrich, Nils Bergen, Jan P. Meier-Kolthoff, Markus Göker, Hans-Peter Klenk, Dietmar Schomburg and Ralf Rabus

      Version of Record online: 27 OCT 2013 | DOI: 10.1111/1462-2920.12276

    8. You have free access to this content
      Rare earth metals are essential for methanotrophic life in volcanic mudpots (pages 255–264)

      Arjan Pol, Thomas R. M. Barends, Andreas Dietl, Ahmad F. Khadem, Jelle Eygensteyn, Mike S. M. Jetten and Huub J. M. Op den Camp

      Version of Record online: 12 SEP 2013 | DOI: 10.1111/1462-2920.12249

    9. Inactivation of a Pleurotus ostreatus versatile peroxidase-encoding gene (mnp2) results in reduced lignin degradation (pages 265–277)

      Tomer M. Salame, Doriv Knop, Dana Levinson, Sameer J. Mabjeesh, Oded Yarden and Yitzhak Hadar

      Version of Record online: 10 OCT 2013 | DOI: 10.1111/1462-2920.12279

    10. The Crc protein inhibits the production of polyhydroxyalkanoates in Pseudomonas putida under balanced carbon/nitrogen growth conditions (pages 278–290)

      Ruggero La Rosa, Fernando de la Peña, María Axiliadora Prieto and Fernando Rojo

      Version of Record online: 6 NOV 2013 | DOI: 10.1111/1462-2920.12303

    11. The metabolic cost of flagellar motion in Pseudomonas putida KT2440 (pages 291–303)

      Esteban Martínez-García, Pablo I. Nikel, Max Chavarría and Víctor de Lorenzo

      Version of Record online: 18 NOV 2013 | DOI: 10.1111/1462-2920.12309

    12. Three different [NiFe] hydrogenases confer metabolic flexibility in the obligate aerobe Mycobacterium smegmatis (pages 318–330)

      Michael Berney, Chris Greening, Kiel Hards, Desmond Collins and Gregory M. Cook

      Version of Record online: 25 NOV 2013 | DOI: 10.1111/1462-2920.12320

  5. Errata

    1. Top of page
    2. Genomics update
    3. Opinion
    4. Minireviews
    5. Research articles
    6. Errata
    7. Web alert
    1. You have free access to this content
      Propagation of MinCDE waves on free-standing membranes (page 331)

      Version of Record online: 6 JAN 2014 | DOI: 10.1111/1462-2920.12348

      This article corrects:

      Propagation of MinCDE waves on free-standing membranes

      Vol. 15, Issue 12, 3319–3326, Version of Record online: 31 OCT 2013

    2. You have free access to this content
      Predicting microbial nitrogen pathways from basic principles (page 332)

      Version of Record online: 6 JAN 2014 | DOI: 10.1111/1462-2920.12354

      This article corrects:

      Predicting microbial nitrogen pathways from basic principles

      Vol. 13, Issue 6, 1477–1487, Version of Record online: 23 MAR 2011

  6. Web alert

    1. Top of page
    2. Genomics update
    3. Opinion
    4. Minireviews
    5. Research articles
    6. Errata
    7. Web alert

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