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Table S1. Description of the Malus accessions analysed with their geographical origins and providers.

Table S2. Pairwise genetic differentiation (FST) among Malus sieversii sites (> 6)

Table S3. Pairwise genetic differentiation (FST) among Malus orientalis sites (> 6)

Figure S1. Bayesian clustering results for Malus sieversii in Central Asia (= 101) using the program TESS from = 2 to = 6.

Figure S2. Bayesian clustering results for Malus orientalis in the Caucasus (= 217) using the program TESS from = 2 to = 6.

Figure S3. Maps representing the mean membership proportions for K clusters, for samples of Malus sylvestris collected from the same site.

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