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evo12107-sup-0001-S1.pdf330K

Supplementary Material S1. Modeling present and Last Glacial Maximum distributions for Eopsaltria australis.

Figure S1A. Distribution of presence data points used for training and testing MaxEnt model overlain on the model of current distribution of Eopsaltria australis.

Figure S1B. Predicted distribution of Eopsaltria australis for the present and Last Glacial Maximum.

evo12107-sup-0002-S2.pdf295K

Supplementary Material S2.

Table S2A. Information on geographic location, sexing, genotyping and sequencing for 107 genetic samples of Eopsaltria australis.

evo12107-sup-0003-S3.pdf381K

Supplementary Material S3. Sex-linked CHD variation for Eopsaltria australis.

Figure S3A. Geographic distribution of two CHD-Z alleles.

evo12107-sup-0004-S4.pdf187K

Supplementary Material S4. Details of BEAST analysis: estimation of mitochondrial haplogroup support and lineage divergence time for Eopsaltria australis assuming neutral evolution of mtDNA.

Figure S4A. Maximum clade credibility tree from BEAST analysis.

evo12107-sup-0005-S5.pdf308K

Supplementary Material S5. Details of STRUCTURE and TESS analyses for Eopsaltria australis.

Figure S5A. Spatial interpolation of admixture proportions for two genetic clusters detected by TESS from six microsatellites and five autosomal introns.

Figure S5B. Membership of each individual in genetic clusters detected by TESS.

Figure S5C. Spatial interpolation of admixture proportions for three genetic clusters detected by TESS from five autosomal introns.

evo12107-sup-0006-S6.docx13K

Supplementary Material S6.

Table S6A. Genetic characteristics of Eopsaltria australis haplogroups estimated from six autosomal microsatellites.

evo12107-sup-0007-S7.docx20KSupplementary Material S7. Additional tests for selection on mitochondrial ND2 of Eopsaltria australis.
evo12107-sup-0008-S8.pdf1311K

Supplementary Material S8. Isolation with migration analysis (IMA2) for two populations of Eopsaltria australis defined by their mtDNA haplogroup membership.

Table S8A. Loci information for IMA2 analysis.

Table S8B. Command lines used for IMA2 analyses.

Table S8C. IMA2 estimates of parameters for the full isolation-with-migration model.

Figure S8A. Posterior distributions of IMa parameters for the full migration model for autosomal introns and all nuclear data.

Figure S8B. Demographic estimates of parameters for the full migration model for autosomal introns and all nuclear data.

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