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Table S1: Prevalence of macroparasites.

Figure S1: Alignment of major histocompatibility complex (MHC) IIB exon 2 sequences.

Figure S2: Maximum likelihood gene tree of the major histocompatibility complex (MHC) IIB intron 2 partition.

Figure S3: Maximum parsimony gene tree of the major histocompatibility complex (MHC) IIB intron 2 partition.

Figure S4: Method consensus gene tree of the major histocompatibility complex (MHC) IIB exon 2 peptide-binding region (PBR) partition.

Figure S5: Four different peptide-binding region (PBR) gene trees used for the method consensus tree.

Figure S6: Different tree topologies for the peptide-binding region (PBR) partition compared in the approximately unbiased (AU) test.

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