• 1
    Rodríguez-Romero J, Hedtke M, Kastner C, Muller S & Fischer R (2010) Fungi, hidden in soil or up in the air: light makes a difference. Annu Rev Microbiol 64, 585610.
  • 2
    Herrera-Estrella A & Horwitz BA (2007) Looking through the eyes of fungi: molecular genetics of photoreception. Mol Microbiol 64, 515.
  • 3
    Chen CH, Dunlap JC & Loros JJ (2010) Neurospora illuminates fungal photoreception. Fungal Genet Biol 47, 922929.
  • 4
    Ballario P, Vittorioso P, Magrelli A, Talora C, Cabibbo A & Macino G (1996) White collar-1, a central regulator of blue light responses in Neurospora, is a zinc finger protein. EMBO J 15, 16501657.
  • 5
    Crosthwaite SK, Dunlap JC & Loros JJ (1997) Neurospora wc-1 and wc-2: transcription, photoresponses, and the origins of circadian rhythmicity. Science 276, 763769.
  • 6
    Linden H & Macino G (1997) White collar 2, a partner in blue-light signal transduction, controlling expression of light-regulated genes in Neurospora crassa. EMBO J 16, 98109.
  • 7
    He Q, Cheng P, Yang Y, Wang L, Gardner KH & Liu Y (2002) White collar-1, a DNA binding transcription factor and a light sensor. Science 297, 840843.
  • 8
    Cheng P, Yang Y, Gardner KH & Liu Y (2002) PAS domain-mediated WC-1/WC-2 interaction is essential for maintaining the steady-state level of WC-1 and the function of both proteins in circadian clock and light responses of Neurospora. Mol Cell Biol 22, 517524.
  • 9
    Froehlich AC, Liu Y, Loros JJ & Dunlap JC (2002) White collar-1, a circadian blue light photoreceptor, binding to the frequency promoter. Science 297, 815819.
  • 10
    He Q & Liu Y (2005) Molecular mechanism of light responses in Neurospora: from light-induced transcription to photoadaptation. Genes Dev 19, 28882899.
  • 11
    Chen CH, Ringelberg CS, Gross RH, Dunlap JC & Loros JJ (2009) Genome-wide analysis of light-inducible responses reveals hierarchical light signalling in Neurospora. EMBO J 28, 10291042.
  • 12
    Smith KM, Sancar G, Dekhang R, Sullivan CM, Li S, Tag AG, Sancar C, Bredeweg EL, Priest HD, McCormick RF et al. (2010) Transcription factors in light and circadian clock signaling networks revealed by genome wide mapping of direct targets for Neurospora white collar complex. Eukaryot Cell 9, 15491556.
  • 13
    Gressel J & Galun E (1967) Morphogenesis in Trichoderma: photoinduction and RNA. Dev Biol 15, 575598.
  • 14
    Casas-Flores S, Ríos-Momberg M, Bibbins M, Ponce-Noyola P & Herrera-Estrella A (2004) BLR-1 and BLR-2, key regulatory elements of photoconidiation and mycelial growth in Trichoderma atroviride. Microbiol 150, 35613569.
  • 15
    Rosales-Saavedra T, Esquivel-Naranjo EU, Casas-Flores S, Martínez-Hernández P, Ibarra-Laclette E, Cortés-Penagos C & Herrera-Estrella A (2006) Novel light-regulated genes in Trichoderma atroviride: a dissection by cDNA microarrays. Microbiol 152, 33053317.
  • 16
    Esquivel-Naranjo EU & Herrera-Estrella A (2007) Enhanced responsiveness and sensitivity to blue light by blr-2 overexpression in Trichoderma atroviride. Microbiol 153, 39093922.
  • 17
    Carreras-Villaseñor N, Sánchez-Arreguin JA & Herrera-Estrella A (2012) Trichoderma: sensing the environment for survival and dispersal. Microbiol 158, 316.
  • 18
    Schmoll M, Esquivel-Naranjo EU & Herrera-Estrella A (2010) Trichoderma in the light of day − physiology and development. Fungal Genet Biol 47, 909916.
  • 19
    Heintzen C, Loros LL & Dunlap JC (2001) The PAS protein VIVID defines a clock-associated feedback loop that represses light input, modulates gating and regulates clock resetting. Cell 104, 453464.
  • 20
    Schwerdtfeger C & Linden H (2001) Blue light adaptation and desensitization of light signal transduction in Neurospora crassa. Mol Microbiol 39, 10801087.
  • 21
    Schmoll M, Franchi L & Kubicek CP (2005) Envoy, a PAS/LOV domain protein of Hypocrea jecorina (Anamorph Trichoderma reesei), modulates cellulase gene transcription in response to light. Eukaryot Cell 4, 19982007.
  • 22
    Castellanos F, Schmoll M, Martínez P, Tisch D, Kubicek CP, Herrera-Estrella A & Esquivel-Naranjo EU (2010) Crucial factors of the light perception machinery and their impact on growth and cellulase gene transcription in Trichoderma reesei. Fungal Genet Biol 47, 468476.
  • 23
    Berrocal-Tito G, Sametz-Baron L, Eichenberg K, Horwitz BA & Herrera-Estrella A (1999) Rapid blue light regulation of a Trichoderma harzianum photolyase gene. J Biol Chem 274, 1428814294.
  • 24
    Berrocal-Tito GM, Rosales-Saavedra T, Herrera-Estrella A & Horwitz BA (2000) Characterization of blue-light and developmental regulation of the photolyase gene phr-1 in Trichoderma harzianum. Photochem Photobiol 71, 662668.
  • 25
    Carattoli A, Cogoni C, Morelli G & Macino G (1994) Molecular characterization of upstream regulatory sequences controlling the photoinduced expression of the albino-3 gene of Neurospora crassa. Mol Microbiol 13, 787795.
  • 26
    Schuster A, Kubicek CP, Friedl MA, Druzhinina IS & Schmoll M (2007) Impact of light on Hypocrea jecorina and the multiple cellular roles of ENVOY in this process. BMC Genomics 8, 449.
  • 27
    Casas-Flores S, Rios-Momberg M, Rosales-Saavedra T, Martinez-Hernandez P, Olmedo-Monfil V & Herrera-Estrella A (2006) Cross talk between a fungal blue-light perception system and the cyclic AMP signaling pathway. Eukaryot Cell 5, 499506.
  • 28
    Berrocal-Tito GM, Esquivel-Naranjo EU, Horwitz BA & Herrera-Estrella A (2007) Trichoderma atroviride PHR1, a fungal photolyase responsible for DNA repair, autoregulates its own photoinduction. Eukaryot Cell 6, 16821692.
  • 29
    Callebaut I, Malivert L, Fischer A, Mornon JP, Revy P & De Villartay JP (2006) Cernunnos interacts with the XRCC4 x DNA–ligase IV complex and is homologous to the yeast nonhomologous end-joining factor Nej1. J Biol Chem 281, 1385713860.
  • 30
    Ruiz-Roldán MC, Garre V, Guarro J, Mariné M & Roncero MI (2008) Role of the white collar 1 photoreceptor in carotenogenesis, UV resistance, hydrophobicity, and virulence of Fusarium oxysporum. Eukaryot Cell 7, 12271230.
  • 31
    Gresik M, Kolarova N & Farkas V (1988) Membrane potential, ATP, and cyclic AMP changes induced by light in Trichoderma viride. Exp Mycol 12, 295301.
  • 32
    Kubicek CP, Herrera-Estrella A, Seidl-Seiboth V, Martinez DA, Druzhinina IS, Thon M, Zeilinger S, Casas-Flores S, Horwitz BA, Mukherjee PK et al. (2011) Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma. Genome Biol 12, R40, doi:10.1186/gb-2011-12-4-r40.
  • 33
    Sano H, Kaneko S, Sakamoto Y, Sato T & Shishido K (2009) The basidiomycetous mushroom Lentinula edodes white collar-2 homolog PHRB, a partner of putative blue-light photoreceptor PHRA, binds to a specific site in the promoter region of the L. edodes tyrosinase gene. Fungal Genet Biol 46, 333341.
  • 34
    Baek JM & Kenerley CM (1998) The arg-2 gene of Trichoderma virens: cloning and development of a homologous transformation system. Fungal Genet Biol 23, 3444.
  • 35
    Ebbole DJ (1990) Vectors for construction of translational fusions to beta-galactosidase. Fungal Genet Newsl 37, 1516.
  • 36
    Carroll AM, Sweigard JA & Valent B (1994) Improved vectors for selecting resistance to hygromycin. Fungal Genet Newsl 41, 22.
  • 37
    Livak KJ & Schmittgen TD (2001) Analysis of relative gene expression data using real-time quantitative PCR and the 2(−Delta Delta C(T)) method. Methods 25, 402408.
  • 38
    Bubner B & Baldwin IT (2004) Use of real-time PCR for determining copy number and zygosity in transgenic plants. Plant Cell Rep 23, 263271.