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References

  • 1
    Typas A, Banzhaf M, Gross CA & Vollmer W (2011) From the regulation of peptidoglycan synthesis to bacterial growth and morphology. Nat Rev Microbiol 10, 123136.
  • 2
    Anantharaman V & Aravind L (2003) Evolutionary history, structural features and biochemical diversity of the NlpC/P60 superfamily of enzymes. Genome Biol 4, R11.
  • 3
    Xu Q, Sudek S, McMullan D, Miller MD, Geierstanger B, Jones DH, Krishna SS, Spraggon G, Bursalay B, Abdubek P et al. (2009) Structural basis of murein peptide specificity of a gamma-D-glutamyl-l-diamino acid endopeptidase. Structure 17, 303313.
  • 4
    Buist G, Steen A, Kok J & Kuipers OP (2008) LysM, a widely distributed protein motif for binding to (peptido)glycans. Mol Microbiol 68, 838847.
  • 5
    Petrovic DM, Leenhouts K, van Roosmalen ML, Kleinjan F & Broos J (2012) Monitoring lysin motif–ligand interactions via tryptophan analog fluorescence spectroscopy. Anal Biochem 428, 111118.
  • 6
    Fukushima T, Afkham A, Kurosawa S, Tanabe T, Yamamoto H & Sekiguchi J (2006) A new D, L-endopeptidase gene product, YojL (renamed CwlS), plays a role in cell separation with LytE and LytF in Bacillus subtilis. J Bacteriol 188, 55415550.
  • 7
    Seidel SA, Dijkman PM, Lea WA, van den Bogaart G, Jerabek-Willemsen M, Lazic A, Joseph JS, Srinivasan P, Baaske P, Simeonov A et al. (2013) Microscale thermophoresis quantifies biomolecular interactions under previously challenging conditions. Methods 59, 301315.
  • 8
    Broghammer A, Krusell L, Blaise M, Sauer J, Sullivan JT, Maolanon N, Vinther M, Lorentzen A, Madsen EB, Jensen KJ et al. (2012) Legume receptors perceive the rhizobial lipochitin oligosaccharide signal molecules by direct binding. Proc Natl Acad Sci USA 109, 1385913864.
  • 9
    Radutoiu S, Madsen LH, Madsen EB, Felle HH, Umehara Y, Grønlund M, Sato S, Nakamura Y, Tabata S, Sandal N et al. (2003) Plant recognition of symbiotic bacteria requires two LysM receptor-like kinases. Nature 425, 585592.
  • 10
    Miya A, Albert P, Shinya T, Desaki Y, Ichimura K, Shirasu K, Narusaka Y, Kawakami N, Kaku H & Shibuya N (2007) CERK1, a LysM receptor kinase, is essential for chitin elicitor signaling in Arabidopsis. Proc Natl Acad Sci USA 104, 1961319618.
  • 11
    Willmann R, Lajunen HM, Erbs G, Newman MA, Kolb D, Tsuda K, Katagiri F, Fliegmann J, Bono JJ, Cullimore JV et al. (2011) Arabidopsis lysin-motif proteins LYM1 LYM3 CERK1 mediate bacterial peptidoglycan sensing and immunity to bacterial infection. Proc Natl Acad Sci USA 108, 1982419829.
  • 12
    Ohnuma T, Onaga S, Murata K, Taira T & Katoh E (2008) LysM domains from Pteris ryukyuensis chitinase-A: a stability study and characterization of the chitin-binding site. J Biol Chem 283, 51785187.
  • 13
    Rougé P, Nerinckx W, Gough C, Bono JJ & Barre A (2011) Docking of chitin oligomers and Nod factors on lectin domains of the LysM-RLK receptors in the Medicago–Rhizobium symbiosis. Adv Exp Med Biol 705, 511521.
  • 14
    Radutoiu S, Madsen LH, Madsen EB, Jurkiewicz A, Fukai E, Quistgaard EM, Albrektsen AS, James EK, Thirup S & Stougaard J (2007) LysM domains mediate lipochitin–oligosaccharide recognition and Nfr genes extend the symbiotic host range. EMBO J 26, 39233935.
  • 15
    Koharudin LM, Viscomi AR, Montanini B, Kershaw MJ, Talbot NJ, Ottonello S & Gronenborn AM (2011) Structure–function analysis of a CVNH-LysM lectin expressed during plant infection by the rice blast fungus Magnaporthe oryzae. Structure 19, 662674.
  • 16
    Liu T, Liu Z, Song C, Hu Y, Han Z, She J, Fan F, Wang J, Jin C, Chang J et al. (2012) Chitin-induced dimerization activates a plant immune receptor. Science 336, 11601164.
  • 17
    Eckert C, Lecerf M, Dubost L, Arthur M & Mesnage S (2006) Functional analysis of AtlA, the major N-acetylglucosaminidase of Enterococcus faecalis. J Bacteriol 88, 85138519.
  • 18
    Steen A, Buist G, Horsburgh GJ, Venema G, Kuipers OP, Foster SJ & Kok J (2005) AcmA of Lactococcus lactis is an N-acetylglucosaminidase with an optimal number of LysM domains for proper functioning. FEBS J 272, 28542868.
  • 19
    Punta M, Coggill PC, Eberhardt RY, Mistry J, Tate J, Boursnell C, Pang N, Forslund K, Ceric G, Clements J et al. (2012) The Pfam protein families database. Nucleic Acids Res 40, 290301.
  • 20
    Hayhurst EJ, Kailas L, Hobbs JK & Foster SJ (2008) Cell wall peptidoglycan architecture in Bacillus subtilis. Proc Natl Acad Sci USA 105, 1460314608.
  • 21
    de Jonge R, van Esse HP, Kombrink A, Shinya T, Desaki Y, Bours R, van der Krol S, Shibuya N, Joosten MH & Thomma BP (2010) Conserved fungal LysM effector Ecp6 prevents chitin-triggered immunity in plants. Science 329, 953955.
  • 22
    Sánchez-Vallet A, Saleem-Batcha R, Kombrink A, Hansen G, Valkenburg DJ, Thomma BP & Mesters JR (2013) Fungal effector Ecp6 outcompetes host immune receptor for chitin binding through intrachain LysM dimerization. Elife 2, e00790.
  • 23
    Shimizu T, Nakano T, Takamizawa D, Desaki Y, Ishii-Minami N, Nishizawa Y, Minami E, Okada K, Yamane H, Kaku H et al. (2010) Two LysM receptor molecules, CEBiP and OsCERK1, cooperatively regulate chitin elicitor signaling in rice. Plant J 64, 204214.
  • 24
    Iizasa E, Mitsutomi M & Nagano Y (2010) Direct binding of a plant LysM receptor-like kinase, LysM RLK1/CERK1, to chitin in vitro. J Biol Chem 285, 29963004.
  • 25
    Petutschnig EK, Jones AM, Serazetdinova L, Lipka U & Lipka V (2010) The lysin motif receptor-like kinase (LysM-RLK) CERK1 is a major chitin-binding protein in Arabidopsis thaliana and subject to chitin-induced phosphorylation. J Biol Chem 285, 2890228911.
  • 26
    Oldroyd GE (2013) Speak, friend, and enter: signalling systems that promote beneficial symbiotic associations in plants. Nat Rev Microbiol 11, 252263.
  • 27
    Madsen LH, Tirichine L, Jurkiewicz A, Sullivan JT, Heckmann AB, Bek AS, Ronson CW, James EK & Stougaard J (2010) The molecular network governing nodule organogenesis and infection in the model legume Lotus japonicus. Nat Commun 1, 112.
  • 28
    Gust AA, Willmann R, Desaki Y, Grabherr HM & Nürnberger T (2012) Plant LysM proteins: modules mediating symbiosis and immunity. Trends Plant Sci 17, 495502.
  • 29
    Petersen TN, Brunak S, von Heijne G & Nielsen H (2011) SignalP 4.0: discriminating signal peptides from transmembrane regions. Nat Methods 8, 785786.
  • 30
    Bordoli L, Kiefer F, Arnold K, Benkert P, Battey J & Schwede T (2009) Protein structure homology modeling using SWISS-MODEL workspace. Nat Protoc 4, 113.
  • 31
    Emsley P, Lohkamp B, Scott WG & Cowtan K (2010) Features and development of Coot. Acta Crystallogr D Biol Crystallogr 66, 486501.
  • 32
    Pedersen JS (2004) A flux- and background-optimized version of the NanoSTAR small-angle X-ray scattering camera for solution scattering. J Appl Crystallogr 37, 369380.
  • 33
    Glatter O (1977) A new method for the evaluation of small-angle scattering data. J Appl Crystallogr 10, 415421.
  • 34
    Oliveira CL, Behrens MA, Pedersen JS, Erlacher K, Otzen D & Pedersen JS (2009) A SAXS study of glucagon fibrillation. J Mol Biol 387, 147161.
  • 35
    Pedersen JS, Hansen S & Bauer R (1994) The aggregation behavior of zinc-free insulin studied by small-angle neutron scattering. Eur Biophys J 22, 379389.
  • 36
    Petoukhov MV, Franke D, Shkumatov AV, Tria G, Kikhney AG, Gajda M, Gorba C, Mertens HDT, Konarev PV & Svergun DI (2012) New developments in the ATSAS program package for small-angle scattering data analysis. J Appl Crystallogr 45, 342350.