SEARCH

SEARCH BY CITATION

References

  • Abram JW, Nedwell DB (1978) Inhibition of methanogenesis by sulphate reducing bacteria competing for transferred hydrogen. Archives of Microbiology 117, 8992.
  • Amann RI (1995) In situ identification of microorganisms by whole cell hybridization with rRNA-targeted nucleic acid probes. In Molecular Microbial Ecology Manual (eds Akkermans ADL, van Elsas JD, de Bruijn FJ). Kluwer Academic Publishers, Dordrecht, pp. 115.
  • Amils R, González-Toril E, Fernández-Remolar DC, Gómez F, Aguilera A, Rodríguez N, Malki M, García-Moyano A, Fairén AG, de la Fuente V, Sanz JL (2007) Extreme environments as Mars terrestrial analogs: the Rio Tinto case. Planetary and Space Science 55, 370381.
  • Andrews SC (1998) Iron storage in bacteria. Advances in Microbial Physiology 40, 281351.
  • Andrews SC (2010) The Ferritin-like superfamily: evolution of the biological iron storeman from a rubrerythrin-like ancestor. Biochimica et Biophysica Acta 1800, 691705.
  • Blanco Y, Prieto-Ballesteros O, Gómez MJ, Moreno-Paz M, García-Villadangos M, Rodríguez-Manfredi JA, Cruz-Gil P, Sánchez-Román M, Rivas LA, Parro V (2012) Prokaryotic communities and operating metabolisms in the surface and the permafrost of Deception Island (Antarctica). Environmental Microbiology 14, 24952510.
  • Bodegom PM, Scholten JC, Stams AJ (2004) Direct inhibition of methanogenesis by ferric iron. FEMS Microbiology Ecology 49, 261268.
  • Daims H, Bruhl A, Amann R, Schleifer K-H, Wagner M (1999) The domain-specific probe EUB338 is insufficient for the detection of all Bacteria: development and evaluation of a more comprehensive probe set. Systematic and Applied Microbiology 22, 434444.
  • Fernández-Remolar DC, Knoll AH (2008) Fossilization potential of iron-bearing minerals in acidic environments of Rio Tinto, Spain: implications for Mars exploration. Icarus 194, 7285.
  • Fernández-Remolar DC, Morris RV, Gruener JE, Amils R, Knoll AH (2005) The Río Tinto Basin, Spain: mineralogy, sedimentary geobiology, and implications for interpretation of outcrop rocks at Meridiani Planum, Mars. Earth and Planetary Science Letters 240, 149167.
  • Fernández-Remolar DC, Gómez F, Prieto-Ballesteros O, Schelble RT, Rodríguez N, Amils R (2008a) Some ecological mechanisms to generate habitability in planetary subsurface areas by chemolithotrophic communities: the río tinto subsurface ecosystem as a model system. Astrobiology 8, 157173.
  • Fernández-Remolar DC, Prieto-Ballesteros O, Rodríguez N, Gómez F, Amils R, Gómez-Elvira J, Stoker CR (2008b) Underground habitats in the Río Tinto basin: a model for subsurface life habitats on Mars. Astrobiology 8, 10231047.
  • Fernández-Remolar DC, Preston LJ, Sánchez-Román M, Izawa MRM, Huang L, Southam G, Banerjee NR, Osinski GR, Flemming R, Gómez-Ortíz D, Prieto Ballesteros O, Rodríguez N, Amils R, Darby Dyar M (2012) Carbonate precipitation under bulk acidic conditions as a potential biosignature for searching life on Mars. Earth and Planetary Science Letters 351, 1326.
  • Freund F, Dickinson JT, Cash M (2002) Hydrogen in Rocks: an energy source for deep microbial communities. Astrobiology 2, 8392.
  • Garrido P, González-Toril E, García-Moyano A, Moreno-Paz M, Amils R, Parro V (2008) An oligonucleotide prokaryotic acidophile microarray: its validation and its use to monitor seasonal variations in extreme acidic environments with total environmental RNA. Environmental Microbiology 10, 836850.
  • Haldeman DL, Amy PS, Ringelberg D, White DC (1993) Characterization of the microbiology within a 21 m3 section of rock from the deep subsurface. Microbial Ecology 26, 145159.
  • Hoehler TM, Jørgensen BB (2013) Microbial life under extreme energy limitation. Nature Reviews Microbiology 11, 8394.
  • Knittel K, Boetius A (2009) Anaerobic oxidation of methane: progress with an unknown process. Annual Review of Microbiology 63, 311334.
  • Leistel JM, Marcoux E, Thieblemont D, Quesada C, Sánchez A, Almodóvar GR, Pascual E, Sáez R (1997) The volcanic-hosted massive sulphide deposits of the Iberian Pyrite Belt. Mineralium Deposita 33, 230.
  • Lovley DR, Phillips EJ (1987) Competitive mechanisms for inhibition of sulfate reduction and methane production in the zone of ferric iron reduction in sediments. Applied and Environment Microbiology 53, 26362641.
  • Orphan VJ, Hinrichs KU, Ussler W 3rd, Paull CK, Taylor LT, Sylva SP, Hayes JM, Delong EF (2001) Comparative analysis of methane-oxidizing archaea and sulfate-reducing bacteria in anoxic marine sediments. Applied and Environment Microbiology 67, 19221934.
  • Parkes RJ, Cragg BA, Wellsbury P (2000) Recent studies on bacterial populations and processes in subseafloor sediments: a review. Hydrogeology Journal 8, 1128.
  • Parkes RJ, Cragg BA, Banning N, Brock F, Webster G, Fry JC, Hornibrook E, Pancost RD, Kelly S, Knab N, Jørgensen BB, Rinna J, Weightman AJ (2007) Biogeochemistry and biodiversity of methane cycling in subsurface marine sediments (Skagerrak, Denmark). Environmental Microbiology 9, 11461161.
  • Parro V, Rodríguez-Manfredi JA, Briones C, Compostizo C, Herrero PL, Vez E, Sebastián E, Moreno-Paz M, García-Villadangos M, Fernández-Calvo P, González-Toril E, Pérez-Mercader J, Fernández-Remolar D, Gómez-Elvira J (2005) Instrument development to search for biomarkers on mars: terrestrial acidophile, iron-powered chemolithoautotrophic communities as model systems. Planet and Space Science 53, 729737.
  • Parro V, Fernández-Calvo P, Rodríguez-Manfredi JA, Moreno-Paz M, Rivas LA, García-Villadangos M, Bonaccorsi R, González-Pastor JE, Prieto-Ballesteros O, Schuerger AC, Davidson M, Gómez-Elvira J, Stoker CR (2008) SOLID2: an antibody array-based life-detector instrument in a mars drilling simulation experiment (MARTE). Astrobiology 8, 987999.
  • Parro V (2010) Antibody microarrays for environmental monitoring. In Handbook of Hydrocarbon and Lipid Microbiology (ed Timmis KN). Springer-Verlag, Berlin, pp. 26992710.
  • Parro V, De Diego-Castilla G, Moreno-Paz M, Blanco Y, Cruz-Gil P, Rodríguez-Manfredi JA, Fernández-Remolar D, Gómez F, Gómez MJ, Rivas LA, Demergasso C, Echeverría A, Urtuvia VN, Ruiz-Bermejo M, García-Villadangos M, Postigo M, Sánchez-Román M, Chong-Díaz G, Gómez-Elvira J (2011) A microbial oasis in the hypersaline Atacama subsurface discovered by a life detector chip: implications for the search for life on Mars. Astrobiology 11, 969996.
  • Pedersen K (2013) Metabolic activity of subterranean microbial communities in deep granitic groundwater supplemented with methane and H(2). ISME Journal 7, 839849.
  • Pernthaler A, Pernthaler J, Amann R (2002) Fluorescence in situ hybridization and catalyzed reporter deposition for the identification of marine bacteria. Applied and Environment Microbiology 68, 30943101.
  • Polz MF, Cavanaugh CM (1998) Bias in template-to-product ratios in multi-template PCR. Applied and Environment Microbiology 64, 37243730.
  • Rivas LA, García-Villadangos M, Moreno-Paz M, Cruz-Gil P, Gómez-Elvira P, Parro V (2008) A 200-antibody microarray biochip for environmental monitoring: searching for universal microbial biomarkers through immunoprofiling. Analytical Chemistry 80, 79707979.
  • Rivas LA, Aguirre J, Blanco Y, González-Toril E, Parro V (2011) Graph-based deconvolution analysis of multiplex sandwich microarray immunoassays: applications for environmental monitoring. Environmental Microbiology 13, 14211432.
  • Sahl JW, Schmidt R, Swanner ED, Mandernack KW, Templeton AS, Kieft TL, Smith RL, Sanford WE, Callaghan RL, Mitton JB, Spear JR (2007) Subsurface microbial diversity in deep-granitic-fracture water in Colorado. Applied and Environment Microbiology 74, 143152.
  • Sanz JL, Rodríguez N, Díaz EE, Amils R (2011) Methanogenesis in the sediments of Rio Tinto, an extreme acidic river. Environmental Microbiology 13, 23362341.
  • Smith JL (2004) The physiological role of ferritin-like compounds in bacteria. Critical Reviews in Microbiology 30, 173185.
  • Stahl DA, Amann R (1991) Development and application of nucleic acid probes. In Nucleic Acid Techniques in Bacterial Systematics (eds Stackebrandt E, Goodfellow M). Wiley, Chichiester, pp. 205248.
  • Stevens TO, McKinley JP (1995) Lithoautotrophic microbial ecosystems in deep basalt aquifers. Science 270, 450455.
  • Stoker CR, Cannon HN, Dunagan SE, Lemke LG, Glass BJ, Miller D, Gomez-Elvira J, Davis K, Zavaleta J, Winterholler A, Roman M, Rodriguez-Manfredi JA, Bonaccorsi R, Bell MS, Brown A, Battler M, Chen B, Cooper G, Davidson M, Fernández-Remolar D, González-Pastor E, Heldmann JL, Martínez-Frías J, Parro V, Prieto-Ballesteros O, Sutter B, Schuerger AC, Schutt J, Rull F (2008) The 2005 MARTE robotic drilling experiment in Río Tinto, Spain: objectives, approach, and results of a simulated mission to search for life in the martian subsurface. Astrobiology 8, 921945.
  • Tuross N, Stathoplos L (1993) Ancient proteins in fossil bones. Methods in Enzymology 224, 121129.
  • Utgikar VP, Harmon SM, Chaudhary N, Tabak HH, Govind R, Haines JR (2002) Inhibition of sulfate-reducing bacteria by metal sulfide formation in bioremediation of acid mine drainage. Environmental Toxicology 17, 4048.
  • Von der Weid I, Korenblum E, Jurelevicius D, Rosado AS, Dino R, Sebastian GV, Seldin L (2008) Molecular diversity of bacterial communities from subseafloor rock samples in a deep-water production basin in Brazil. Journal of Microbiology and Biotechnology 18, 514.
  • Widerlund A, Davison W (2007) Size and density distribution of sulfide-producing microniches in lake sediments. Environmental Science and Technology 41, 80448049.
  • Winfrey MR, Zeikus JG (1977) Effect of sulfate on carbon and electron flow during microbial methanogenesis in freshwater sediments. Applied and Environment Microbiology 33, 275281.
  • Yilmaz S, Allgaier M, Hugenholtz P (2010) Multiple displacement amplification compromises quantitative analysis of metagenomes. Nature Methods 7, 943944.
  • Zhang L, Keller J, Yuan Z (2009) Inhibition of sulfate-reducing and methanogenic activities of anaerobic sewer biofilms by ferric iron dosing. Water Research 43, 41234132.