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irv12193-sup-0001-figureS1.docxWord document5836KFigure S1. Phylogenetic relationships of matrix (M) sequences from 1040 influenza A virus isolates collected in the United States from 2009–2012.
irv12193-sup-0002-figureS2.docxWord document6957KFigure S2. Phylogenetic relationships of neuraminidase (NA) sequences from (A) 403 N1 and (B) 646 N2 influenza A virus isolates collected in the United States from 2009–2012.
irv12193-sup-0003-figureS3.docxWord document311KFigure S3. Seasonal time series decomposition by Loess (STL) of H1N2 isolates submitted by month to the NAHLN laboratories for the USDA swine IAV surveillance system from 2009–2012.
irv12193-sup-0004-figureS4.docxWord document294KFigure S4. Seasonal time series decomposition by Loess (STL) of H3N2 isolates submitted by month to the NAHLN laboratories for the USDA swine IAV surveillance system from 2009–2012.
irv12193-sup-0005-figureS5.docxWord document12450KFigure S5. Phylogenetic relationships of hemagglutinin (HA) sequences from (A) 804 H1, and (B) 271 H3 hemagglutinin influenza A virus isolates collected in the United States from 2009–2012.
irv12193-sup-0006-TableS1.docxWord document192KTable S1. NCBI Genbank accession numbers for the data set (271 H3 HA sequences, 804 H1 hemagglutinin sequences, 403 N1 and 646 N2 neuraminidase sequences, and 1040 M sequences) of swine influenza A viruses used in this analysis.

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